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NM_000433.4(NCF2):c.1360C>T (p.Pro454Ser) AND not provided

Germline classification:
Benign/Likely benign (2 submissions)
Last evaluated:
Jul 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001668644.17

Allele description [Variation Report for NM_000433.4(NCF2):c.1360C>T (p.Pro454Ser)]

NM_000433.4(NCF2):c.1360C>T (p.Pro454Ser)

Gene:
NCF2:neutrophil cytosolic factor 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1q25.3
Genomic location:
Preferred name:
NM_000433.4(NCF2):c.1360C>T (p.Pro454Ser)
HGVS:
  • NC_000001.11:g.183560204G>A
  • NG_007267.1:g.35378C>T
  • NM_000433.4:c.1360C>TMANE SELECT
  • NM_001127651.3:c.1360C>T
  • NM_001190789.2:c.1117C>T
  • NM_001190794.2:c.1225C>T
  • NP_000424.2:p.Pro454Ser
  • NP_000424.2:p.Pro454Ser
  • NP_001121123.1:p.Pro454Ser
  • NP_001177718.1:p.Pro373Ser
  • NP_001177723.1:p.Pro409Ser
  • LRG_88t1:c.1360C>T
  • LRG_88:g.35378C>T
  • LRG_88p1:p.Pro454Ser
  • NC_000001.10:g.183529339G>A
  • NM_000433.3:c.1360C>T
Protein change:
P373S
Links:
dbSNP: rs55761650
NCBI 1000 Genomes Browser:
rs55761650
Molecular consequence:
  • NM_000433.4:c.1360C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001127651.3:c.1360C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001190789.2:c.1117C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001190794.2:c.1225C>T - missense variant - [Sequence Ontology: SO:0001583]
Observations:
5

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001882983GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Benign
(Nov 5, 2018)
germlineclinical testing

Citation Link,

SCV002585166CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Jul 1, 2024)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes5not providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001882983.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 29454792)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV002585166.15

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided5not providednot providedclinical testingnot provided

Description

NCF2: BP4, BS2

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided5not providednot providednot provided

Last Updated: Oct 20, 2024