NM_006009.4(TUBA1A):c.859T>A (p.Ser287Thr) AND not provided

Germline classification:: Uncertain significance (2 submissions)
Last evaluated:: Feb 19, 2021
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001663504.3

Allele description [Variation Report for NM_006009.4(TUBA1A):c.859T>A (p.Ser287Thr)]

NM_006009.4(TUBA1A):c.859T>A (p.Ser287Thr)

Gene:

TUBA1A:tubulin alpha 1a [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

12q13.12

Genomic location:

Preferred name:

NM_006009.4(TUBA1A):c.859T>A (p.Ser287Thr)

HGVS:

NC_000012.12:g.49185507A>T
NG_008966.1:g.8572T>A
NM_001270399.2:c.859T>A
NM_001270400.2:c.754T>A
NM_006009.4:c.859T>AMANE SELECT
NP_001257328.1:p.Ser287Thr
NP_001257329.1:p.Ser252Thr
NP_006000.2:p.Ser287Thr
NC_000012.11:g.49579290A>T
NM_001270399.1:c.859T>A
NM_006009.3:c.859T>A

Protein change:

S252T

Links:

dbSNP: rs150978489

NCBI 1000 Genomes Browser:

rs150978489

Molecular consequence:

NM_001270399.2:c.859T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001270400.2:c.754T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_006009.4:c.859T>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

Clear Turn Off Turn On

ALG12 [Theropithecus gelada]
ALG12 [Theropithecus gelada]
Gene ID:112633486

Gene
CHST8 [Lonchura striata]
CHST8 [Lonchura striata]
Gene ID:110473817

Gene
LOC129452420 [Misgurnus anguillicaudatus]
LOC129452420 [Misgurnus anguillicaudatus]
Gene ID:129452420

Gene

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001880317	Athena Diagnostics	criteria provided, single submitter (Athena Diagnostics criteria)	Uncertain significance (Feb 19, 2021)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV005191807	Breakthrough Genomics, Breakthrough Genomics	criteria provided, single submitter (ACMG Guidelines, 2015)	Uncertain significance	germline	not provided	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001880317

Athena Diagnostics

criteria provided, single submitter

(Athena Diagnostics criteria)

Uncertain significance
(Feb 19, 2021)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV005191807

Breakthrough Genomics, Breakthrough Genomics

criteria provided, single submitter

(ACMG Guidelines, 2015)

Uncertain significance

germline

not provided

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	not provided
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]

PMID:: 26467025
PMCID:: PMC4737317

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Athena Diagnostics, SCV001880317.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Breakthrough Genomics, Breakthrough Genomics, SCV005191807.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	not provided	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Aug 25, 2024

ClinVar

Relating variation to medicine