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NM_000051.4(ATM):c.6415G>T (p.Glu2139Ter) AND Colonic neoplasm

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 12, 2021
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001644830.9

Allele description [Variation Report for NM_000051.4(ATM):c.6415G>T (p.Glu2139Ter)]

NM_000051.4(ATM):c.6415G>T (p.Glu2139Ter)

Genes:
ATM:ATM serine/threonine kinase [Gene - OMIM - HGNC]
C11orf65:chromosome 11 open reading frame 65 [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q22.3
Genomic location:
Preferred name:
NM_000051.4(ATM):c.6415G>T (p.Glu2139Ter)
HGVS:
  • NC_000011.10:g.108320021G>T
  • NG_009830.1:g.102190G>T
  • NG_054724.1:g.154812C>A
  • NM_000051.4:c.6415G>TMANE SELECT
  • NM_001330368.2:c.641-10950C>A
  • NM_001351110.2:c.*39-10950C>A
  • NM_001351834.2:c.6415G>T
  • NP_000042.3:p.Glu2139Ter
  • NP_000042.3:p.Glu2139Ter
  • NP_001338763.1:p.Glu2139Ter
  • LRG_135t1:c.6415G>T
  • LRG_135:g.102190G>T
  • LRG_135p1:p.Glu2139Ter
  • NC_000011.9:g.108190748G>T
  • NM_000051.3:c.6415G>T
Protein change:
E2139*
Links:
dbSNP: rs1339238483
NCBI 1000 Genomes Browser:
rs1339238483
Molecular consequence:
  • NM_001330368.2:c.641-10950C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351110.2:c.*39-10950C>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_000051.4:c.6415G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001351834.2:c.6415G>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Colonic neoplasm
Synonyms:
Colonic Neoplasms; Neoplasm of the colon
Identifiers:
MONDO: MONDO:0005401; MeSH: D003110; MedGen: C0009375; Human Phenotype Ontology: HP:0100273

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001852741Medical Genetics Laboratory, Umraniye Training and Research Hospital, University of Health Sciences
no assertion criteria provided
Pathogenic
(Sep 12, 2021)
germlinecase-control

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedcase-control

Details of each submission

From Medical Genetics Laboratory, Umraniye Training and Research Hospital, University of Health Sciences, SCV001852741.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
11not providednot providedcase-controlnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: May 19, 2024