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NM_000421.5(KRT10):c.1373+1del AND Congenital reticular ichthyosiform erythroderma

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 8, 2021
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001619784.1

Allele description [Variation Report for NM_000421.5(KRT10):c.1373+1del]

NM_000421.5(KRT10):c.1373+1del

Genes:
KRT10-AS1:KRT10 antisense RNA 1 [Gene - HGNC]
KRT10:keratin 10 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
17q21.2
Genomic location:
Preferred name:
NM_000421.5(KRT10):c.1373+1del
HGVS:
  • NC_000017.11:g.40819517del
  • NG_008405.1:g.8096del
  • NG_008405.2:g.8098del
  • NM_000421.5:c.1373+1delMANE SELECT
  • NM_001379366.1:c.1373+1del
  • NC_000017.10:g.38975769del
  • NM_000421.4:c.1373+1delG
  • c.1373+1delG
Links:
OMIM: 148080.0024; dbSNP: rs2143133654
NCBI 1000 Genomes Browser:
rs2143133654
Molecular consequence:
  • NM_000421.5:c.1373+1del - splice donor variant - [Sequence Ontology: SO:0001575]
  • NM_001379366.1:c.1373+1del - splice donor variant - [Sequence Ontology: SO:0001575]

Condition(s)

Name:
Congenital reticular ichthyosiform erythroderma (IWC)
Synonyms:
ICHTHYOSIS WITH CONFETTI
Identifiers:
MONDO: MONDO:0012208; MedGen: C3665704; Orphanet: 281190; OMIM: 609165

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001847705OMIM
no assertion criteria provided
Pathogenic
(Sep 8, 2021)
germlineliterature only

PubMed (2)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

Genetic Reversion via Mitotic Recombination in Ichthyosis with Confetti due to a KRT10 Polyalanine Frameshift Mutation.

Lim YH, Qiu J, Saraceni C, Burrall BA, Choate KA.

J Invest Dermatol. 2016 Aug;136(8):1725-1728. doi: 10.1016/j.jid.2016.04.023. Epub 2016 May 18. No abstract available.

PubMed [citation]
PMID:
27208707
PMCID:
PMC5547564

Arginine- but not alanine-rich carboxy-termini trigger nuclear translocation of mutant keratin 10 in ichthyosis with confetti.

Renz P, Imahorn E, Spoerri I, Aushev M, March OP, Wariwoda H, Von Arb S, Volz A, Itin PH, Reichelt J, Burger B.

J Cell Mol Med. 2019 Dec;23(12):8442-8452. doi: 10.1111/jcmm.14727. Epub 2019 Oct 22.

PubMed [citation]
PMID:
31638346
PMCID:
PMC6850952

Details of each submission

From OMIM, SCV001847705.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (2)

Description

In a 28-year-old man (IWC100) with ichthyosis with confetti (IWC; 609165), Lim et al. (2016) identified heterozygosity for a de novo 1-bp deletion (c.1373delG) at the last base of exon 6 of the KRT10 gene, causing a frameshift that replaced the endogenous glycine-rich tail domain of keratin-10 with an alanine-rich motif that extended the C terminus by 19 additional amino acids. Immunolocalization in affected skin showed an overall reduction in suprabasal K10 staining, with evidence of filament network collapse and focal aggregates within the nucleus; these findings were not seen in revertant or normal control skin. Costaining with a nucleolar marker revealed K10 aggregates within the nucleolus. Immunolocalization of the KRT10 binding partner KRT1 (139350) also demonstrated nuclear mislocalization. Laser-capture microdissection of 3 white spots revealed that each revertant spot harbored copy-neutral loss of heterozygosity in the proximal q arm of chromosome 17 extending to the telomere, consistent with reversion via mitotic recombination. For all 3 revertant spots, the region of crossover was estimated to fall between SNPs rs6505079 and rs8078229.

Renz et al. (2019) stated that the correct designation for this mutation is c.1373+1delG. Analysis of NKc21 keratinocytes transfected with the variant from patient IWC100 revealed 5 different splicing products, including 3 that encoded K10 with an arginine tail (K10arg), 1 that encoded a truncated K10 protein, and a minor transcript encoding K10 with an alanine tail (K10ala). Immunofluorescence analysis demonstrated aberrant nuclear localization of K10arg but not of K10ala; however, the presence of K10arg was shown to enable cotranslocation of non-K10arg, including wildtype or truncated K10, into the nucleus. The authors concluded that arginine-rich, rather than alanine-rich, K10 tails are responsible for the pathogenic nuclear localization of K10 in patients with IWC.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023