NM_000251.3(MSH2):c.782T>C (p.Met261Thr) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Mar 7, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001582562.5

Allele description [Variation Report for NM_000251.3(MSH2):c.782T>C (p.Met261Thr)]

NM_000251.3(MSH2):c.782T>C (p.Met261Thr)

Gene:

MSH2:mutS homolog 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

2p21

Genomic location:

Preferred name:

NM_000251.3(MSH2):c.782T>C (p.Met261Thr)

HGVS:

NC_000002.12:g.47412550T>C
NG_007110.2:g.14427T>C
NM_000251.3:c.782T>CMANE SELECT
NM_001258281.1:c.584T>C
NP_000242.1:p.Met261Thr
NP_000242.1:p.Met261Thr
NP_001245210.1:p.Met195Thr
LRG_218t1:c.782T>C
LRG_218:g.14427T>C
LRG_218p1:p.Met261Thr
NC_000002.11:g.47639689T>C
NM_000251.1:c.782T>C
NM_000251.2:c.782T>C

Protein change:

M195T

Links:

dbSNP: rs63749969

NCBI 1000 Genomes Browser:

rs63749969

Molecular consequence:

NM_000251.3:c.782T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001258281.1:c.584T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

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VGR-related protein [Herbaspirillum seropedicae SmR1]
VGR-related protein [Herbaspirillum seropedicae SmR1]
gi|300073059|gnl|bbmufp|Hsero_0941| J62458.1|

Protein
cytochrome c oxidase subunit I, partial (mitochondrion) [Levantina asira]
cytochrome c oxidase subunit I, partial (mitochondrion) [Levantina asira]
gi|2165260244|gb|UGX63551.1|

Protein
Evoluton of a novel CMS factor in the Andropogoneae
Evoluton of a novel CMS factor in the Andropogoneae
A novel CMS factor from Andropogoneae mitochondria investigated by ONT MinION sequencing

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001812624	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Mar 7, 2022)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001812624

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Mar 7, 2022)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001812624.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Not observed at a significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as a pathogenic or benign germline variant to our knowledge; This variant is associated with the following publications: (PMID: 22949387, 18383312, 26333163, 10348818, 18822302, 21120944)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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