U.S. flag

An official website of the United States government

NM_002437.5(MPV17):c.268TTG[1] (p.Leu91del) AND Mitochondrial DNA depletion syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 11, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001582504.1

Allele description [Variation Report for NM_002437.5(MPV17):c.268TTG[1] (p.Leu91del)]

NM_002437.5(MPV17):c.268TTG[1] (p.Leu91del)

Gene:
MPV17:mitochondrial inner membrane protein MPV17 [Gene - OMIM - HGNC]
Variant type:
Microsatellite
Cytogenetic location:
2p23.3
Genomic location:
Preferred name:
NM_002437.5(MPV17):c.268TTG[1] (p.Leu91del)
HGVS:
  • NC_000002.11:g.27535553_27535555del
  • NC_000002.12:g.27312688ACA[1]
  • NG_008075.1:g.14874TTG[1]
  • NG_033055.1:g.573TTG[1]
  • NM_002437.5:c.268TTG[1]MANE SELECT
  • NP_002428.1:p.Leu91del
  • NC_000002.11:g.27535553_27535555del
  • NC_000002.11:g.27535553_27535555delCAA
  • NC_000002.11:g.27535555ACA[1]
  • NM_002437.4:c.271_273delTTG
  • NM_002437.5:c.271_273delMANE SELECT
Protein change:
L91del
Links:
dbSNP: rs267607264
NCBI 1000 Genomes Browser:
rs267607264
Molecular consequence:
  • NM_002437.5:c.268TTG[1] - inframe_deletion - [Sequence Ontology: SO:0001822]

Condition(s)

Name:
Mitochondrial DNA depletion syndrome
Synonyms:
mitochondrial DNA depletion
Identifiers:
MONDO: MONDO:0018158; MedGen: C0342782; OMIM: PS603041

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001821217Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Pathogenic
(Aug 11, 2021)
germlineclinical testing

PubMed (8)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

MPV17 mutations in juvenile- and adult-onset axonal sensorimotor polyneuropathy.

Baumann M, Schreiber H, Schlotter-Weigel B, Löscher WN, Stucka R, Karall D, Strom TM, Bauer P, Krabichler B, Fauth C, Glaeser D, Senderek J.

Clin Genet. 2019 Jan;95(1):182-186. doi: 10.1111/cge.13462. Epub 2018 Oct 25.

PubMed [citation]
PMID:
30298599

MPV17-related mitochondrial DNA maintenance defect: New cases and review of clinical, biochemical, and molecular aspects.

El-Hattab AW, Wang J, Dai H, Almannai M, Staufner C, Alfadhel M, Gambello MJ, Prasun P, Raza S, Lyons HJ, Afqi M, Saleh MAM, Faqeih EA, Alzaidan HI, Alshenqiti A, Flore LA, Hertecant J, Sacharow S, Barbouth DS, Murayama K, Shah AA, Lin HC, et al.

Hum Mutat. 2018 Apr;39(4):461-470. doi: 10.1002/humu.23387. Epub 2018 Jan 13.

PubMed [citation]
PMID:
29282788
See all PubMed Citations (8)

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV001821217.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (8)

Description

Variant summary: MPV17 c.271_273delTTG (p.Leu91del) results in an in-frame deletion that is predicted to remove one amino acid from the encoded protein. The variant allele was found at a frequency of 2e-05 in 251476 control chromosomes. c.271_273delTTG has been reported in the literature in individuals affected with MPV17 related Mitochondrial DNA Depletion Syndrome (example, El-Hattab_2010, El-Hattab_2018, Quaio_2020, Shimura_2020). These data indicate that the variant is likely to be associated with disease. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. Two clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar after 2014 without evidence for independent evaluation. One laboratory classified the variant as likely pathogenic and one laboratory classified the variant as uncertain significance citing a classification dated earlier than the most recent evidence in the literature cited above. Based on the evidence outlined above, the variant was classified as pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024