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NM_003242.6(TGFBR2):c.94+16245G>A AND not provided

Germline classification:
Likely benign (5 submissions)
Last evaluated:
Jul 1, 2024
Review status:
2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001579668.23

Allele description [Variation Report for NM_003242.6(TGFBR2):c.94+16245G>A]

NM_003242.6(TGFBR2):c.94+16245G>A

Gene:
TGFBR2:transforming growth factor beta receptor 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p24.1
Genomic location:
Preferred name:
NM_003242.6(TGFBR2):c.94+16245G>A
HGVS:
  • NC_000003.12:g.30623222G>A
  • NG_007490.1:g.21721G>A
  • NM_001024847.3:c.118G>A
  • NM_001407126.1:c.118G>A
  • NM_001407128.1:c.70G>A
  • NM_001407133.1:c.-166G>A
  • NM_001407136.1:c.-176G>A
  • NM_001407137.1:c.118G>A
  • NM_001407139.1:c.118G>A
  • NM_003242.6:c.94+16245G>AMANE SELECT
  • NP_001020018.1:p.Asp40Asn
  • NP_001020018.1:p.Asp40Asn
  • NP_001394055.1:p.Asp40Asn
  • NP_001394057.1:p.Asp24Asn
  • NP_001394066.1:p.Asp40Asn
  • NP_001394068.1:p.Asp40Asn
  • LRG_779t1:c.118G>A
  • LRG_779t2:c.94+16245G>A
  • LRG_779:g.21721G>A
  • LRG_779p1:p.Asp40Asn
  • NC_000003.11:g.30664714G>A
  • NM_001024847.2:c.118G>A
  • NM_003242.5:c.94+16245G>A
Protein change:
D24N
Links:
dbSNP: rs61732532
NCBI 1000 Genomes Browser:
rs61732532
Molecular consequence:
  • NM_003242.6:c.94+16245G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001024847.3:c.118G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407126.1:c.118G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407128.1:c.70G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407137.1:c.118G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001407139.1:c.118G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
6

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001808089Genome Diagnostics Laboratory, Amsterdam University Medical Center - VKGL Data-share Consensus
no assertion criteria provided
Likely benigngermlineclinical testing

SCV001972839Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV002035539Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

SCV002496792CeGaT Center for Human Genetics Tuebingen
criteria provided, single submitter

(CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)
Likely benign
(Jul 1, 2024)
germlineclinical testing

Citation Link,

SCV004564620ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories
criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2024)
Likely benign
(May 15, 2023)
germlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes6not providednot providednot providednot providedclinical testing
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Genome Diagnostics Laboratory, Amsterdam University Medical Center - VKGL Data-share Consensus, SCV001808089.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001972839.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV002035539.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From CeGaT Center for Human Genetics Tuebingen, SCV002496792.18

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided6not providednot providedclinical testingnot provided

Description

TGFBR2: BP4, BS1

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided6not providednot providednot provided

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV004564620.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024