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NM_001202.6(BMP4):c.345C>T (p.Asn115=) AND not provided

Germline classification:
Uncertain significance (2 submissions)
Last evaluated:
Jun 16, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001578226.4

Allele description [Variation Report for NM_001202.6(BMP4):c.345C>T (p.Asn115=)]

NM_001202.6(BMP4):c.345C>T (p.Asn115=)

Gene:
BMP4:bone morphogenetic protein 4 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q22.2
Genomic location:
Preferred name:
NM_001202.6(BMP4):c.345C>T (p.Asn115=)
HGVS:
  • NC_000014.9:g.53951878G>A
  • NG_009215.1:g.9959C>T
  • NM_001202.6:c.345C>TMANE SELECT
  • NM_001347912.1:c.486C>T
  • NM_001347913.2:c.156C>T
  • NM_001347914.2:c.345C>T
  • NM_001347915.2:c.156C>T
  • NM_001347916.1:c.345C>T
  • NM_001347917.1:c.156C>T
  • NM_130850.5:c.345C>T
  • NM_130851.4:c.345C>T
  • NP_001193.2:p.Asn115=
  • NP_001334841.1:p.Asn162=
  • NP_001334842.1:p.Asn52=
  • NP_001334843.1:p.Asn115=
  • NP_001334844.1:p.Asn52=
  • NP_001334845.1:p.Asn115=
  • NP_001334846.1:p.Asn52=
  • NP_570911.2:p.Asn115=
  • NP_570912.2:p.Asn115=
  • NC_000014.8:g.54418596G>A
  • NM_001202.3:c.345C>T
Links:
dbSNP: rs143687498
NCBI 1000 Genomes Browser:
rs143687498
Molecular consequence:
  • NM_001202.6:c.345C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001347912.1:c.486C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001347913.2:c.156C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001347914.2:c.345C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001347915.2:c.156C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001347916.1:c.345C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001347917.1:c.156C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_130850.5:c.345C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_130851.4:c.345C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001805775GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Uncertain significance
(Jun 16, 2021)
germlineclinical testing

Citation Link,

SCV001964876Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001805775.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Identified in patients with ocular malformation defects and described as likely to be inconsequential in published literature (Bakrania et al., 2008); In silico analysis, which includes splice predictors and evolutionary conservation, supports that this variant does not alter protein structure/function; This variant is associated with the following publications: (PMID: 27535533, 18252212)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV001964876.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024