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NM_022089.4(ATP13A2):c.3087C>T (p.Phe1029=) AND not provided

Germline classification:
Likely benign (3 submissions)
Last evaluated:
Dec 30, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001576065.5

Allele description [Variation Report for NM_022089.4(ATP13A2):c.3087C>T (p.Phe1029=)]

NM_022089.4(ATP13A2):c.3087C>T (p.Phe1029=)

Gene:
ATP13A2:ATPase cation transporting 13A2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
1p36.13
Genomic location:
Preferred name:
NM_022089.4(ATP13A2):c.3087C>T (p.Phe1029=)
HGVS:
  • NC_000001.11:g.16986953G>A
  • NG_009054.1:g.29976C>T
  • NM_001141973.3:c.3072C>T
  • NM_001141974.3:c.2955C>T
  • NM_022089.4:c.3087C>TMANE SELECT
  • NP_001135445.1:p.Phe1024=
  • NP_001135446.1:p.Phe985=
  • NP_071372.1:p.Phe1029=
  • LRG_834t1:c.3087C>T
  • LRG_834:g.29976C>T
  • LRG_834p1:p.Phe1029=
  • NC_000001.10:g.17313448G>A
  • NM_022089.2:c.3087C>T
  • NM_022089.3:c.3087C>T
Links:
dbSNP: rs184878897
NCBI 1000 Genomes Browser:
rs184878897
Molecular consequence:
  • NM_001141973.3:c.3072C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001141974.3:c.2955C>T - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_022089.4:c.3087C>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001803177GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Dec 30, 2020)
germlineclinical testing

Citation Link,

SCV002034930Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus
no assertion criteria provided
Likely benigngermlineclinical testing

SCV002038101Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus

See additional submitters

no assertion criteria provided
Likely benigngermlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001803177.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV002034930.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center - VKGL Data-share Consensus, SCV002038101.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024