NM_000138.5(FBN1):c.2956G>A (p.Ala986Thr) AND not provided

Germline classification:: Likely benign (4 submissions)
Last evaluated:: Aug 1, 2024
Review status:: 2 stars out of maximum of 4 stars
criteria provided, multiple submitters, no conflicts

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001573319.27

Allele description [Variation Report for NM_000138.5(FBN1):c.2956G>A (p.Ala986Thr)]

NM_000138.5(FBN1):c.2956G>A (p.Ala986Thr)

Gene:

FBN1:fibrillin 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

15q21.1

Genomic location:

Preferred name:

NM_000138.5(FBN1):c.2956G>A (p.Ala986Thr)

Other names:

p.A986T:GCA>ACA; NM_000138.5(FBN1):c.2956G>A

HGVS:

NC_000015.10:g.48489977C>T
NG_008805.2:g.160812G>A
NM_000138.5:c.2956G>AMANE SELECT
NP_000129.3:p.Ala986Thr
NP_000129.3:p.Ala986Thr
LRG_778t1:c.2956G>A
LRG_778:g.160812G>A
LRG_778p1:p.Ala986Thr
NC_000015.9:g.48782174C>T
NM_000138.4:c.2956G>A
c.2956G>A

Protein change:

A986T

Links:

dbSNP: rs112287730

NCBI 1000 Genomes Browser:

rs112287730

Molecular consequence:

NM_000138.5:c.2956G>A - missense variant - [Sequence Ontology: SO:0001583]

Observations:

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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1884254[uid] (1)
Taxonomy
Chain A, FATTY ACID METABOLISM REGULATOR PROTEIN
Chain A, FATTY ACID METABOLISM REGULATOR PROTEIN
gi|13096422|pdb|1HW1|A

Protein
PREDICTED: Girardinichthys multiradiatus adenosine A1 receptor b (adora1b), tran...
PREDICTED: Girardinichthys multiradiatus adenosine A1 receptor b (adora1b), transcript variant X1, mRNA
gi|2215949855|ref|XM_047372325.1|

Nucleotide
Mus musculus sperm flagellar 1 like (Spef1l), transcript variant 3, mRNA
Mus musculus sperm flagellar 1 like (Spef1l), transcript variant 3, mRNA
gi|1327850638|ref|NM_001347614.2|

Nucleotide
PREDICTED: Oncorhynchus keta secreted frizzled-related protein 1-like (LOC118358...
PREDICTED: Oncorhynchus keta secreted frizzled-related protein 1-like (LOC118358502), mRNA
gi|2401632859|ref|XM_035736401.2|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV000233776	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Likely benign (Oct 28, 2020)	germline	clinical testing	Citation Link,
SCV001799013	Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus	no assertion criteria provided	Likely benign	germline	clinical testing
SCV001928720	Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus See additional submitters Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	no assertion criteria provided	Likely benign	germline	clinical testing
SCV002497785	CeGaT Center for Human Genetics Tuebingen	criteria provided, single submitter (CeGaT Center For Human Genetics Tuebingen Variant Classification Criteria Version 2)	Likely benign (Aug 1, 2024)	germline	clinical testing	Citation Link

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Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	9	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV000233776.12

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

This variant is associated with the following publications: (PMID: 16220557, 24793577, 12402346, 19370756, 27582083, 26410935, 28387797, 23608731, 28679693)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Laboratory of Diagnostic Genome Analysis, Leiden University Medical Center (LUMC) - VKGL Data-share Consensus, SCV001799013.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Genome Diagnostics Laboratory, University Medical Center Utrecht - VKGL Data-share Consensus, SCV001928720.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From CeGaT Center for Human Genetics Tuebingen, SCV002497785.18

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	9	not provided	not provided	clinical testing	not provided

Description

FBN1: BS1

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		9	not provided	not provided	not provided

Last Updated: Nov 10, 2024

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