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NM_001110792.2(MECP2):c.301C>T (p.Arg101Cys) AND not provided

Germline classification:
Likely benign (1 submission)
Last evaluated:
May 13, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001561656.9

Allele description [Variation Report for NM_001110792.2(MECP2):c.301C>T (p.Arg101Cys)]

NM_001110792.2(MECP2):c.301C>T (p.Arg101Cys)

Gene:
MECP2:methyl-CpG binding protein 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xq28
Genomic location:
Preferred name:
NM_001110792.2(MECP2):c.301C>T (p.Arg101Cys)
Other names:
NM_001110792.2(MECP2):c.301C>T; p.Arg101Cys
HGVS:
  • NC_000023.11:g.154032319G>A
  • NG_007107.3:g.109785C>T
  • NM_001110792.2:c.301C>TMANE SELECT
  • NM_001316337.2:c.-15C>T
  • NM_001369391.2:c.-15C>T
  • NM_001369392.2:c.-15C>T
  • NM_001369393.2:c.-15C>T
  • NM_001369394.2:c.-15C>T
  • NM_001386137.1:c.-296C>T
  • NM_001386138.1:c.-296C>T
  • NM_001386139.1:c.-296C>T
  • NM_004992.4:c.265C>T
  • NP_001104262.1:p.Arg101Cys
  • NP_004983.1:p.Arg89Cys
  • NP_004983.1:p.Arg89Cys
  • LRG_764t1:c.301C>T
  • LRG_764t2:c.265C>T
  • LRG_764:g.109785C>T
  • LRG_764p1:p.Arg101Cys
  • LRG_764p2:p.Arg89Cys
  • NC_000023.10:g.153297770G>A
  • NG_007107.2:g.109809C>T
  • NM_004992.3:c.265C>T
Protein change:
R101C
Links:
dbSNP: rs782601477
NCBI 1000 Genomes Browser:
rs782601477
Molecular consequence:
  • NM_001316337.2:c.-15C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001369391.2:c.-15C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001369392.2:c.-15C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001369393.2:c.-15C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001369394.2:c.-15C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001386137.1:c.-296C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001386138.1:c.-296C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001386139.1:c.-296C>T - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_001110792.2:c.301C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004992.4:c.265C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001784294GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Likely benign
(May 13, 2021) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001784294.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Has not been previously published as pathogenic or benign to our knowledge; The majority of missense variants in this gene are considered pathogenic (Stenson et al., 2014); In silico analysis, which includes protein predictors and evolutionary conservation, supports that this variant does not alter protein structure/function

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024