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NM_001354604.2(MITF):c.1388C>A (p.Thr463Asn) AND not provided

Germline classification:
Likely benign (1 submission)
Last evaluated:
Dec 15, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001561492.2

Allele description [Variation Report for NM_001354604.2(MITF):c.1388C>A (p.Thr463Asn)]

NM_001354604.2(MITF):c.1388C>A (p.Thr463Asn)

Gene:
MITF:melanocyte inducing transcription factor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p13
Genomic location:
Preferred name:
NM_001354604.2(MITF):c.1388C>A (p.Thr463Asn)
HGVS:
  • NC_000003.12:g.69965055C>A
  • NG_011631.1:g.230574C>A
  • NM_000248.4:c.1067C>A
  • NM_001184967.2:c.1214C>A
  • NM_001354604.2:c.1388C>AMANE SELECT
  • NM_001354605.2:c.1385C>A
  • NM_001354606.2:c.1367C>A
  • NM_001354607.2:c.1319C>A
  • NM_001354608.2:c.1214C>A
  • NM_006722.3:c.1367C>A
  • NM_198158.3:c.1049C>A
  • NM_198159.3:c.1370C>A
  • NM_198177.3:c.1322C>A
  • NM_198178.3:c.881C>A
  • NP_000239.1:p.Thr356Asn
  • NP_001171896.1:p.Thr405Asn
  • NP_001341533.1:p.Thr463Asn
  • NP_001341534.1:p.Thr462Asn
  • NP_001341535.1:p.Thr456Asn
  • NP_001341536.1:p.Thr440Asn
  • NP_001341537.1:p.Thr405Asn
  • NP_006713.1:p.Thr456Asn
  • NP_937801.1:p.Thr350Asn
  • NP_937802.1:p.Thr457Asn
  • NP_937820.1:p.Thr441Asn
  • NP_937821.2:p.Thr294Asn
  • LRG_776t1:c.1067C>A
  • LRG_776:g.230574C>A
  • NC_000003.11:g.70014206C>A
  • NM_000248.3:c.1067C>A
Protein change:
T294N
Links:
dbSNP: rs560808156
NCBI 1000 Genomes Browser:
rs560808156
Molecular consequence:
  • NM_000248.4:c.1067C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001184967.2:c.1214C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354604.2:c.1388C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354605.2:c.1385C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354606.2:c.1367C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354607.2:c.1319C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354608.2:c.1214C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_006722.3:c.1367C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198158.3:c.1049C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198159.3:c.1370C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198177.3:c.1322C>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198178.3:c.881C>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001784108GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Likely benign
(Dec 15, 2020) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001784108.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

In silico analysis supports that this missense variant does not alter protein structure/function; Has not been previously published as pathogenic or benign to our knowledge

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 13, 2024