NM_001371623.1(TCOF1):c.1228T>C (p.Ser410Pro) AND not provided

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Feb 21, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001552462.2

Allele description [Variation Report for NM_001371623.1(TCOF1):c.1228T>C (p.Ser410Pro)]

NM_001371623.1(TCOF1):c.1228T>C (p.Ser410Pro)

Gene:

TCOF1:treacle ribosome biogenesis factor 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

5q32

Genomic location:

Preferred name:

NM_001371623.1(TCOF1):c.1228T>C (p.Ser410Pro)

HGVS:

NC_000005.10:g.150374761T>C
NG_011341.1:g.22123T>C
NM_000356.4:c.997T>C
NM_001008657.3:c.1228T>C
NM_001135243.2:c.1228T>C
NM_001135244.2:c.1228T>C
NM_001135245.2:c.997T>C
NM_001195141.2:c.1228T>C
NM_001371623.1:c.1228T>CMANE SELECT
NP_000347.2:p.Ser333Pro
NP_001008657.1:p.Ser410Pro
NP_001128715.1:p.Ser410Pro
NP_001128716.1:p.Ser410Pro
NP_001128717.1:p.Ser333Pro
NP_001182070.1:p.Ser410Pro
NP_001358552.1:p.Ser410Pro
NC_000005.9:g.149754324T>C
NM_001135243.1:c.1228T>C

Protein change:

S333P

Links:

dbSNP: rs749270349

NCBI 1000 Genomes Browser:

rs749270349

Molecular consequence:

NM_000356.4:c.997T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001008657.3:c.1228T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001135243.2:c.1228T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001135244.2:c.1228T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001135245.2:c.997T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001195141.2:c.1228T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001371623.1:c.1228T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001773150	GeneDx	criteria provided, single submitter (GeneDx Variant Classification Process June 2021)	Uncertain significance (Feb 21, 2020)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001773150

GeneDx

criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)

Uncertain significance
(Feb 21, 2020)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From GeneDx, SCV001773150.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

In silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect; Has not been previously published as pathogenic or benign to our knowledge

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 1, 2024

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