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NM_000518.5(HBB):c.394_404del (p.Gln132fs) AND Dominant beta-thalassemia

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Aug 3, 2021
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001549283.1

Allele description [Variation Report for NM_000518.5(HBB):c.394_404del (p.Gln132fs)]

NM_000518.5(HBB):c.394_404del (p.Gln132fs)

Genes:
LOC110006319:beta-globin gene 3' regulatory region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
Deletion
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.394_404del (p.Gln132fs)
HGVS:
  • NC_000011.10:g.5225639_5225649del
  • NG_000007.3:g.71968_71978del
  • NG_046672.1:g.3574_3584del
  • NG_053049.1:g.1960_1970del
  • NG_059281.1:g.6424_6434del
  • NM_000518.5:c.394_404delMANE SELECT
  • NP_000509.1:p.Gln132fs
  • LRG_1232t1:c.394_404del
  • LRG_1232:g.6424_6434del
  • LRG_1232p1:p.Gln132fs
  • NC_000011.9:g.5246869_5246879del
Protein change:
Q132fs
Links:
OMIM: 141900.0540
Molecular consequence:
  • NM_000518.5:c.394_404del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Dominant beta-thalassemia
Synonyms:
DYSERYTHROPOIETIC ANEMIA, CONGENITAL, IRISH OR WEATHERALL TYPE; Beta-thalassemia, dominant inclusion body type
Identifiers:
MONDO: MONDO:0011381; MedGen: C1858990; Orphanet: 231226; Orphanet: 848; OMIM: 603902

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001769406OMIM
no assertion criteria provided
Pathogenic
(Aug 3, 2021)
germlineliterature only

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlinenot providednot providednot providednot providednot providednot providedliterature only

Citations

PubMed

A deletion of 11 bp (CD 131-134) in exon 3 of the beta-globin gene produces the phenotype of inclusion body beta-thalassemia.

Ropero P, Villegas A, Martínez M, Ataulfo González Fernández F, Benavente C, Mateo M.

Ann Hematol. 2005 Sep;84(9):584-7. Epub 2005 Jun 24.

PubMed [citation]
PMID:
15977037

Details of each submission

From OMIM, SCV001769406.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedliterature only PubMed (1)

Description

In a 51-year-old Spanish man with inclusion body beta-thalassemia (603902), Ropero et al. (2005) identified a heterozygous 11-basepair deletion in exon 3 of the HBB gene by direct sequencing. The deletion from codon 131 to codon 134 (-CAGAAAGTGGT) was predicted to produce a frameshift and synthesis of an abnormal and likely unstable beta-chain variant of 134 amino acids instead of the normal 146 amino acids. Inheritance could not be determined because the parents were deceased. The patient was diagnosed with beta-thalassemia in adulthood with marked siderosis, slight microcytic anemia that never needed transfusion, moderate hemolysis, subclinical jaundice, painful splenomegaly, and hepatomegaly. The patient was also homozygous for the H63D substitution in the HFE gene (613609.0002); the authors noted that the HFE variant increases the probability of developing iron overload when it is associated with beta-thalassemia, and suggested that it could contribute to siderosis.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlinenot providednot providednot providednot providednot providednot providednot providednot provided

Last Updated: Jun 9, 2024