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NM_000179.3(MSH6):c.36dup (p.Lys13fs) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Dec 20, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001540583.2

Allele description [Variation Report for NM_000179.3(MSH6):c.36dup (p.Lys13fs)]

NM_000179.3(MSH6):c.36dup (p.Lys13fs)

Gene:
MSH6:mutS homolog 6 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
2p16.3
Genomic location:
Preferred name:
NM_000179.3(MSH6):c.36dup (p.Lys13fs)
HGVS:
  • NC_000002.12:g.47783269dup
  • NG_007111.1:g.5123dup
  • NM_000179.3:c.36dupMANE SELECT
  • NM_001281492.2:c.36dup
  • NM_001281493.2:c.-701dup
  • NP_000170.1:p.Lys13fs
  • NP_001268421.1:p.Lys13fs
  • LRG_219t1:c.36dup
  • LRG_219:g.5123dup
  • NC_000002.11:g.48010408dup
  • NM_000179.2:c.36dupC
Protein change:
K13fs
Links:
dbSNP: rs2103932294
NCBI 1000 Genomes Browser:
rs2103932294
Molecular consequence:
  • NM_001281493.2:c.-701dup - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
  • NM_000179.3:c.36dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001281492.2:c.36dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001758483GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Pathogenic
(Dec 20, 2019) 		germlineclinical testing

Citation Link

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV001758483.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Frameshift variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is a known mechanism of disease; Not observed in large population cohorts (Lek 2016); Truncating variants in this gene are considered pathogenic by a well-established clinical consortium and/or database; Has not been previously published as pathogenic or benign to our knowledge

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 1, 2024