NM_000548.5(TSC2):c.138+20C>G AND not provided

Germline classification:: Benign (2 submissions)
Last evaluated:: Nov 30, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001528276.3

Allele description [Variation Report for NM_000548.5(TSC2):c.138+20C>G]

NM_000548.5(TSC2):c.138+20C>G

Gene:

TSC2:TSC complex subunit 2 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16p13.3

Genomic location:

Preferred name:

NM_000548.5(TSC2):c.138+20C>G

HGVS:

NC_000016.10:g.2048773C>G
NG_005895.1:g.4468C>G
NG_008412.1:g.4094G>C
NM_000548.5:c.138+20C>GMANE SELECT
NM_001077183.3:c.138+20C>G
NM_001114382.3:c.138+20C>G
NM_001318827.2:c.138+20C>G
NM_001318829.2:c.-10+708C>G
NM_001318831.2:c.-89+20C>G
NM_001318832.2:c.171+20C>G
NM_001363528.2:c.138+20C>G
NM_001370404.1:c.138+20C>G
NM_001370405.1:c.138+20C>G
NM_021055.3:c.138+20C>G
LRG_487t1:c.138+20C>G
LRG_1366:g.4094G>C
LRG_487:g.4468C>G
NC_000016.9:g.2098774C>G
NM_000548.3:c.138+20C>G
p.(=)

Links:

Tuberous sclerosis database (TSC2): TSC2_00342; dbSNP: rs45517092

NCBI 1000 Genomes Browser:

rs45517092

Molecular consequence:

NM_000548.5:c.138+20C>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001077183.3:c.138+20C>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001114382.3:c.138+20C>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001318827.2:c.138+20C>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001318829.2:c.-10+708C>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001318831.2:c.-89+20C>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001318832.2:c.171+20C>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001363528.2:c.138+20C>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001370404.1:c.138+20C>G - intron variant - [Sequence Ontology: SO:0001627]
NM_001370405.1:c.138+20C>G - intron variant - [Sequence Ontology: SO:0001627]
NM_021055.3:c.138+20C>G - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Help

Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001739745	Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus	no assertion criteria provided	Likely benign	germline	clinical testing
SCV004563087	ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories	criteria provided, single submitter (ARUP Molecular Germline Variant Investigation Process 2024)	Benign (Nov 30, 2023)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001739745

Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus

no assertion criteria provided

Likely benign

germline

clinical testing

SCV004563087

ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories

criteria provided, single submitter

(ARUP Molecular Germline Variant Investigation Process 2024)

Benign
(Nov 30, 2023)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	not provided	not provided	not provided	not provided	not provided	clinical testing
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen - VKGL Data-share Consensus, SCV001739745.3

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories, SCV004563087.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

ClinVar

Relating variation to medicine