U.S. flag

An official website of the United States government

NM_000053.4(ATP7B):c.1740del (p.His580fs) AND Wilson disease

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 1, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001527073.1

Allele description [Variation Report for NM_000053.4(ATP7B):c.1740del (p.His580fs)]

NM_000053.4(ATP7B):c.1740del (p.His580fs)

Gene:
ATP7B:ATPase copper transporting beta [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
13q14.3
Genomic location:
Preferred name:
NM_000053.4(ATP7B):c.1740del (p.His580fs)
HGVS:
  • NC_000013.11:g.51965001del
  • NG_008806.1:g.51494del
  • NM_000053.4:c.1740delMANE SELECT
  • NM_001005918.3:c.1740del
  • NM_001243182.2:c.1407del
  • NM_001330578.2:c.1740del
  • NM_001330579.2:c.1740del
  • NP_000044.2:p.His580fs
  • NP_001005918.1:p.His580fs
  • NP_001230111.1:p.His469fs
  • NP_001317507.1:p.His580fs
  • NP_001317508.1:p.His580fs
  • NC_000013.10:g.52539137del
  • NM_000053.3:c.1740del
  • p.His580GlnFs*3
Protein change:
H469fs
Links:
dbSNP: rs2139777345
NCBI 1000 Genomes Browser:
rs2139777345
Molecular consequence:
  • NM_000053.4:c.1740del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001005918.3:c.1740del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001243182.2:c.1407del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001330578.2:c.1740del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001330579.2:c.1740del - frameshift variant - [Sequence Ontology: SO:0001589]
Observations:
1

Condition(s)

Name:
Wilson disease (WND)
Synonyms:
Wilson's disease; Hepatolenticular degeneration
Identifiers:
MONDO: MONDO:0010200; MedGen: C0019202; Orphanet: 905; OMIM: 277900

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001737908Inborn Errors of Metabolism Laboratory, Hospices Civils de Lyon
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Jun 1, 2021) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Inborn Errors of Metabolism Laboratory, Hospices Civils de Lyon, SCV001737908.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Dec 24, 2023