NM_000039.3(APOA1):c.283T>C (p.Phe95Leu) AND not specified

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: May 24, 2021
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001526889.1

Allele description [Variation Report for NM_000039.3(APOA1):c.283T>C (p.Phe95Leu)]

NM_000039.3(APOA1):c.283T>C (p.Phe95Leu)

Genes:

APOA1-AS:APOA1 antisense RNA [Gene - OMIM - HGNC]
APOA1:apolipoprotein A1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

11q23.3

Genomic location:

Preferred name:

NM_000039.3(APOA1):c.283T>C (p.Phe95Leu)

HGVS:

NC_000011.10:g.116836329A>G
NG_012021.1:g.6294T>C
NM_000039.3:c.283T>CMANE SELECT
NM_001318017.2:c.283T>C
NM_001318018.2:c.283T>C
NM_001318021.2:c.-45T>C
NP_000030.1:p.Phe95Leu
NP_000030.1:p.Phe95Leu
NP_001304946.1:p.Phe95Leu
NP_001304947.1:p.Phe95Leu
LRG_767t1:c.283T>C
LRG_767:g.6294T>C
LRG_767p1:p.Phe95Leu
NC_000011.9:g.116707045A>G
NM_000039.1:c.283T>C
NM_000039.2:c.283T>C
NM_001318021.1:c.-45T>C

Protein change:

F95L

Links:

dbSNP: rs2134231444

NCBI 1000 Genomes Browser:

rs2134231444

Molecular consequence:

NM_000039.3:c.283T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001318017.2:c.283T>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001318018.2:c.283T>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:: AllHighlyPenetrant
Identifiers:: MedGen: CN169374

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001737635	Women's Health and Genetics/Laboratory Corporation of America, LabCorp	criteria provided, single submitter (LabCorp Variant Classification Summary - May 2015)	Uncertain significance (May 24, 2021)	germline	clinical testing	Citation Link

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001737635

Women's Health and Genetics/Laboratory Corporation of America, LabCorp

criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)

Uncertain significance
(May 24, 2021)

germline

clinical testing

Citation Link

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV001737635.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

Description

Variant summary: APOA1 c.283T>C (p.Phe95Leu) results in a non-conservative amino acid change in the encoded protein sequence. Four of five in-silico tools predict a benign effect of the variant on protein function. The variant was absent in 251392 control chromosomes (gnomAD). The available data on variant occurrences in the general population are insufficient to allow any conclusion about variant significance. To our knowledge, no occurrence of c.283T>C in individuals affected with Cardiomyopathy and no experimental evidence demonstrating its impact on protein function have been reported. A co-occurrence with a pathogenic variant has been reported (DSP c.8193C>G, p.Y2731X; Internal testing). No clinical diagnostic laboratories have submitted clinical-significance assessments for this variant to ClinVar after 2014. Based on the evidence outlined above, the variant was classified as uncertain significance.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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