NM_000243.3(MEFV):c.1686G>A (p.Gln562=) AND Familial Mediterranean fever

Germline classification:: Likely benign (1 submission)
Last evaluated:: Mar 11, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001450349.7

Allele description [Variation Report for NM_000243.3(MEFV):c.1686G>A (p.Gln562=)]

NM_000243.3(MEFV):c.1686G>A (p.Gln562=)

Genes:

LOC126862264:CDK7 strongly-dependent group 2 enhancer GRCh37_chr16:3293322-3294521 [Gene]
MEFV:MEFV innate immunity regulator, pyrin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

16p13.3

Genomic location:

Preferred name:

NM_000243.3(MEFV):c.1686G>A (p.Gln562=)

HGVS:

NC_000016.10:g.3244513C>T
NG_007871.1:g.17115G>A
NM_000243.3:c.1686G>AMANE SELECT
NM_001198536.2:c.1053G>A
NP_000234.1:p.Gln562=
NP_001185465.2:p.Gln351=
LRG_190:g.17115G>A
NC_000016.9:g.3294513C>T

Links:

dbSNP: rs779244985

NCBI 1000 Genomes Browser:

rs779244985

Molecular consequence:

NM_000243.3:c.1686G>A - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001198536.2:c.1053G>A - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Familial Mediterranean fever (FMF)
Synonyms:: POLYSEROSITIS, FAMILIAL PAROXYSMAL; POLYSEROSITIS, RECURRENT; Periodic peritonitis; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0018088; MedGen: C0031069; Orphanet: 342; OMIM: 249100

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Odorant binding protein 2A [Homo sapiens]
Odorant binding protein 2A [Homo sapiens]
gi|47479498|gb|AAH69563.1|

Protein
ART4 [Chlamydotis macqueenii]
ART4 [Chlamydotis macqueenii]
Gene ID:104478793

Gene
Neoplastic Cells, Circulating
Neoplastic Cells, Circulating
Exfoliate neoplastic cells circulating in the blood and associated with metastasizing tumors.<br/>Year introduced: 2009 (1965)

MeSH
Anticestodal Agents [Pharmacological Action]
Anticestodal Agents [Pharmacological Action]

MeSH
Chondrosarcoma
Chondrosarcoma
A slowly growing malignant neoplasm derived from cartilage cells, occurring most frequently in pelvic bones or near the ends of long bones, in middle-aged and old people. Most...<br/>

MeSH

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001653954	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Mar 11, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001653954

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Mar 11, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001653954.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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