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NM_000540.3(RYR1):c.13994_13995delinsCT (p.Leu4665Pro) AND Malignant hyperthermia of anesthesia

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Apr 6, 2023
Review status:
3 stars out of maximum of 4 stars
reviewed by expert panel
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001450012.2

Allele description [Variation Report for NM_000540.3(RYR1):c.13994_13995delinsCT (p.Leu4665Pro)]

NM_000540.3(RYR1):c.13994_13995delinsCT (p.Leu4665Pro)

Gene:
RYR1:ryanodine receptor 1 [Gene - OMIM - HGNC]
Variant type:
Indel
Cytogenetic location:
19q13.2
Genomic location:
Preferred name:
NM_000540.3(RYR1):c.13994_13995delinsCT (p.Leu4665Pro)
HGVS:
  • NC_000019.10:g.38572266_38572267delinsCT
  • NG_008866.1:g.143567_143568delinsCT
  • NM_000540.3:c.13994_13995delinsCTMANE SELECT
  • NM_001042723.2:c.13979_13980delinsCT
  • NP_000531.2:p.Leu4665Pro
  • NP_001036188.1:p.Leu4660Pro
  • LRG_766:g.143567_143568delinsCT
  • NC_000019.9:g.39062906_39062907delinsCT
  • NM_001042723.2(RYR1):c.13979_13980delinsCT
  • p.(Leu4665Pro)
  • p.Leu4660Pro
Protein change:
L4660P
Links:
dbSNP: rs193922862
NCBI 1000 Genomes Browser:
rs193922862
Molecular consequence:
  • NM_000540.3:c.13994_13995delinsCT - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001042723.2:c.13979_13980delinsCT - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Malignant hyperthermia of anesthesia
Synonyms:
Hyperthermia of anesthesia; Anesthesic-triggered malignant hyperthermia
Identifiers:
MONDO: MONDO:0018493; MedGen: C0024591; Human Phenotype Ontology: HP:0034733

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001653562ClinGen Malignant Hyperthermia Susceptibility Variant Curation Expert Panel, ClinGen
reviewed by expert panel

(RYR1-MHS Interpretation Guidelines V2)
Uncertain significance
(Apr 6, 2023)
germlinecuration

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedcuration

Details of each submission

From ClinGen Malignant Hyperthermia Susceptibility Variant Curation Expert Panel, ClinGen, SCV001653562.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcurationnot provided

Description

This pathogenicity assessment is relevant only for malignant hyperthermia susceptibility (MHS) inherited in an autosomal dominant pattern. Variants in RYR1 can also cause other myopathies inherited in an autosomal dominant pattern or in an autosomal recessive pattern. Some of these disorders may predispose individuals to malignant hyperthermia. RYR1 variants may also contribute to a malignant hyperthermia reaction in combination with other genetic and non-genetic factors and the clinician needs to consider such factors in making management decisions. This sequence variant predicts a substitution of leucine with proline at codon 4665 of the RYR1 protein, p.(Leu4665Pro), c.13994_13995delTCinsCT. This variant was not present in a large population database (gnomAD) at the time this variant was interpreted. This variant has been reported as de novo in one individual with a personal history of a malignant hyperthermia reaction. This individual did not have a positive in vitro contracture test (IVCT) or caffeine halothane contracture test (CHCT) result (PMID: 17483490), PS4 was not met, PM6_supporting was implemented. No functional studies were identified for this variant. This variant resides in a region of RYR1 considered to be a hotspot for pathogenic variants that contribute to MHS, PM1_Sup (PMID: 21118704). No REVEL score was available for this variant. This variant has been classified as a Variant of Unknown Significance. Criteria implemented: PM6_Supporting, PM1_Supporting.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 16, 2024