NM_032043.3(BRIP1):c.3423T>C (p.Asp1141=) AND multiple conditions

Germline classification:: Likely benign (1 submission)
Last evaluated:: Aug 14, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001421334.8

Allele description [Variation Report for NM_032043.3(BRIP1):c.3423T>C (p.Asp1141=)]

NM_032043.3(BRIP1):c.3423T>C (p.Asp1141=)

Gene:

BRIP1:BRCA1 interacting DNA helicase 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

17q23.2

Genomic location:

Preferred name:

NM_032043.3(BRIP1):c.3423T>C (p.Asp1141=)

HGVS:

NC_000017.11:g.61683623A>G
NG_007409.2:g.184937T>C
NM_032043.3:c.3423T>CMANE SELECT
NP_114432.2:p.Asp1141=
LRG_300:g.184937T>C
NC_000017.10:g.59760984A>G

Links:

dbSNP: rs2144076602

NCBI 1000 Genomes Browser:

rs2144076602

Molecular consequence:

NM_032043.3:c.3423T>C - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Familial cancer of breast
Synonyms:: Breast cancer, familial; Hereditary breast cancer
Identifiers:: MONDO: MONDO:0016419; MedGen: C0346153; OMIM: 114480

Name:: Fanconi anemia complementation group J
Identifiers:: MONDO: MONDO:0012187; MedGen: C1836860; Orphanet: 84; OMIM: 609054

Recent activity

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Treponema pedis isoM1111 segment1189, whole genome shotgun sequence
Treponema pedis isoM1111 segment1189, whole genome shotgun sequence
gi|540325076|gb|AOTO01001190.1||gnl AOTO01|segment1189

Nucleotide
Treponema pedis isoM1111 segment1202, whole genome shotgun sequence
Treponema pedis isoM1111 segment1202, whole genome shotgun sequence
gi|540325048|gb|AOTO01001203.1||gnl AOTO01|segment1202

Nucleotide
AGENCOURT_77836050 NICHD_XGC_skin_m Xenopus laevis cDNA clone IMAGE:8643415 5', ...
AGENCOURT_77836050 NICHD_XGC_skin_m Xenopus laevis cDNA clone IMAGE:8643415 5', mRNA sequence
gi|95019256|gnl|dbEST|39161485|gb|E 40.1|

Nucleotide
AGENCOURT_73509232 NICHD_XGC_sple_PHA Xenopus laevis cDNA clone IMAGE:8462053 5'...
AGENCOURT_73509232 NICHD_XGC_sple_PHA Xenopus laevis cDNA clone IMAGE:8462053 5', mRNA sequence
gi|92077834|gnl|dbEST|38008281|gb|E 04.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001623858	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Aug 14, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001623858

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Aug 14, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001623858.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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