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NM_000518.5(HBB):c.8del (p.His3fs) AND Hemoglobinopathy

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Apr 16, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001420874.1

Allele description [Variation Report for NM_000518.5(HBB):c.8del (p.His3fs)]

NM_000518.5(HBB):c.8del (p.His3fs)

Genes:
LOC106099062:HBB recombination region [Gene]
HBB:hemoglobin subunit beta [Gene - OMIM - HGNC]
LOC107133510:origin of replication at HBB [Gene]
Variant type:
Deletion
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000518.5(HBB):c.8del (p.His3fs)
Other names:
CD 2 CAT>C-T
HGVS:
  • NC_000011.10:g.5227014del
  • NG_000007.3:g.70602del
  • NG_042296.1:g.545del
  • NG_046672.1:g.4949del
  • NG_059281.1:g.5058del
  • NM_000518.5:c.8delMANE SELECT
  • NP_000509.1:p.His3fs
  • LRG_1232t1:c.8del
  • LRG_1232:g.5058del
  • LRG_1232p1:p.His3fs
  • NC_000011.9:g.5248244del
  • NM_000518.4:c.8delA
Protein change:
H3fs
Links:
dbSNP: rs1847589398
NCBI 1000 Genomes Browser:
rs1847589398
Molecular consequence:
  • NM_000518.5:c.8del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Hemoglobinopathy
Synonyms:
Hemoglobin disorder; Haemoglobinopathies
Identifiers:
MONDO: MONDO:0044348; MedGen: C0019045

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001623294Women's Health and Genetics/Laboratory Corporation of America, LabCorp
criteria provided, single submitter

(LabCorp Variant Classification Summary - May 2015)
Likely pathogenic
(Apr 16, 2021)
germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Genotype-phenotype correlation and report of novel mutations in β-globin gene in thalassemia patients.

Nagar R, Sinha S, Raman R.

Blood Cells Mol Dis. 2015 Jun;55(1):10-4. doi: 10.1016/j.bcmd.2015.03.005. Epub 2015 Mar 28.

PubMed [citation]
PMID:
25976460

Details of each submission

From Women's Health and Genetics/Laboratory Corporation of America, LabCorp, SCV001623294.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

Variant summary: HBB c.8delA (p.His3LeufsX2) results in a premature termination codon, predicted to cause a truncation of the encoded protein or absence of the protein due to nonsense mediated decay, which are commonly known mechanisms for disease. Truncations downstream of this position have been classified as pathogenic by our laboratory. The variant was absent in 251090 control chromosomes. c.8delA has been reported in the literature in the mother of a deceased thalassemic child who presented at age 6 months, and survived until 11 months, with two transfusions occurring within that period (Nagar_2015). To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. One clinical diagnostic laboratory has submitted clinical-significance assessments for this variant to ClinVar after 2014 without evidence for independent evaluation. One laboratory classified the variant as pathogenic. Based on the evidence outlined above, the variant was classified as likely pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2022