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NM_019616.4(F7):c.1292C>T (p.Ser431Leu) AND Factor VII deficiency

Germline classification:
Likely benign (1 submission)
Last evaluated:
Apr 28, 2021
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001420381.3

Allele description [Variation Report for NM_019616.4(F7):c.1292C>T (p.Ser431Leu)]

NM_019616.4(F7):c.1292C>T (p.Ser431Leu)

Gene:
F7:coagulation factor VII [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
13q34
Genomic location:
Preferred name:
NM_019616.4(F7):c.1292C>T (p.Ser431Leu)
HGVS:
  • NC_000013.11:g.113118965C>T
  • NG_009258.1:g.1167C>T
  • NG_009262.1:g.18175C>T
  • NM_000131.4:c.1358C>T
  • NM_001267554.2:c.1106C>T
  • NM_019616.4:c.1292C>TMANE SELECT
  • NP_000122.1:p.Ser453Leu
  • NP_001254483.1:p.Ser369Leu
  • NP_062562.1:p.Ser431Leu
  • LRG_554t1:c.1358C>T
  • LRG_548:g.1167C>T
  • LRG_554:g.18175C>T
  • LRG_554p1:p.Ser453Leu
  • NC_000013.10:g.113773279C>T
  • NM_001267554.1:c.1106C>T
  • NR_051961.2:n.1376C>T
Protein change:
S369L
Links:
dbSNP: rs1490539322
NCBI 1000 Genomes Browser:
rs1490539322
Molecular consequence:
  • NM_000131.4:c.1358C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001267554.2:c.1106C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_019616.4:c.1292C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NR_051961.2:n.1376C>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]

Condition(s)

Name:
Factor VII deficiency
Synonyms:
Factor 7 deficiency; F7 deficiency; Hypoproconvertinemia
Identifiers:
MONDO: MONDO:0002244; MeSH: D005168; MedGen: C0015503

Recent activity

  • Calotropis gigantea
    Calotropis gigantea
    Genome and Transcriptome Sequencing of Calotropis gigantea
    BioProject

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001622540Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely benign
(Apr 28, 2021)
germlineresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedresearch

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Center for Genomic Medicine, King Faisal Specialist Hospital and Research Center, SCV001622540.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Aug 4, 2024