NM_001032221.6(STXBP1):c.786T>G (p.Asp262Glu) AND Early infantile epileptic encephalopathy with suppression bursts

Germline classification:: Likely benign (1 submission)
Last evaluated:: Apr 1, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001412897.8

Allele description [Variation Report for NM_001032221.6(STXBP1):c.786T>G (p.Asp262Glu)]

NM_001032221.6(STXBP1):c.786T>G (p.Asp262Glu)

Gene:

STXBP1:syntaxin binding protein 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9q34.11

Genomic location:

Preferred name:

NM_001032221.6(STXBP1):c.786T>G (p.Asp262Glu)

HGVS:

NC_000009.12:g.127666288T>G
NG_016623.1:g.59082T>G
NM_001032221.6:c.786T>GMANE SELECT
NM_001374306.2:c.777T>G
NM_001374307.2:c.744T>G
NM_001374308.2:c.744T>G
NM_001374309.2:c.744T>G
NM_001374310.2:c.744T>G
NM_001374311.2:c.744T>G
NM_001374312.2:c.744T>G
NM_001374313.2:c.786T>G
NM_001374314.1:c.786T>G
NM_001374315.2:c.786T>G
NM_003165.6:c.786T>G
NP_001027392.1:p.Asp262Glu
NP_001361235.1:p.Asp259Glu
NP_001361236.1:p.Asp248Glu
NP_001361237.1:p.Asp248Glu
NP_001361238.1:p.Asp248Glu
NP_001361239.1:p.Asp248Glu
NP_001361240.1:p.Asp248Glu
NP_001361241.1:p.Asp248Glu
NP_001361242.1:p.Asp262Glu
NP_001361243.1:p.Asp262Glu
NP_001361244.1:p.Asp262Glu
NP_003156.1:p.Asp262Glu
NC_000009.11:g.130428567T>G

Protein change:

D248E

Links:

dbSNP: rs2131473084

NCBI 1000 Genomes Browser:

rs2131473084

Molecular consequence:

NM_001032221.6:c.786T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374306.2:c.777T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374307.2:c.744T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374308.2:c.744T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374309.2:c.744T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374310.2:c.744T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374311.2:c.744T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374312.2:c.744T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374313.2:c.786T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374314.1:c.786T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_001374315.2:c.786T>G - missense variant - [Sequence Ontology: SO:0001583]
NM_003165.6:c.786T>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Early infantile epileptic encephalopathy with suppression bursts (EIEE)
Synonyms:: Early infantile epileptic encephalopathy; Ohtahara syndrome; Developmental and epileptic encephalopathy
Identifiers:: MONDO: MONDO:0100062; MedGen: C0393706; Orphanet: 1934; OMIM: PS308350

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microtubule-associated protein 2 isoform 2 [Homo sapiens]
microtubule-associated protein 2 isoform 2 [Homo sapiens]
gi|14195618|ref|NP_114033.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001614996	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Apr 1, 2020)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001614996

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Apr 1, 2020)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001614996.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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