U.S. flag

An official website of the United States government

NM_006941.4(SOX10):c.1400A>T (p.Ter467Leu) AND PCWH syndrome

Germline classification:
Likely pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001376161.12

Allele description [Variation Report for NM_006941.4(SOX10):c.1400A>T (p.Ter467Leu)]

NM_006941.4(SOX10):c.1400A>T (p.Ter467Leu)

Genes:
POLR2F:RNA polymerase II, I and III subunit F [Gene - OMIM - HGNC]
SOX10:SRY-box transcription factor 10 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
22q13.1
Genomic location:
Preferred name:
NM_006941.4(SOX10):c.1400A>T (p.Ter467Leu)
HGVS:
  • NC_000022.11:g.37973496T>A
  • NG_007948.1:g.16037A>T
  • NM_001301130.2:c.293+6326T>A
  • NM_001301131.2:c.293+6326T>A
  • NM_001363825.1:c.*38+1186T>A
  • NM_006941.4:c.1400A>TMANE SELECT
  • NP_008872.1:p.Ter467Leu
  • NP_008872.1:p.Ter467Leu
  • LRG_271t1:c.1400A>T
  • LRG_271:g.16037A>T
  • LRG_271p1:p.Ter467Leu
  • NC_000022.10:g.38369503T>A
  • NM_006941.3:c.1400A>T
Links:
dbSNP: rs2145760379
NCBI 1000 Genomes Browser:
rs2145760379
Molecular consequence:
  • NM_001301130.2:c.293+6326T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001301131.2:c.293+6326T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001363825.1:c.*38+1186T>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_006941.4:c.1400A>T - stop lost - [Sequence Ontology: SO:0001578]

Condition(s)

Name:
PCWH syndrome
Synonyms:
WAARDENBURG-SHAH SYNDROME, NEUROLOGIC VARIANT; Peripheral demyelinating neuropathy, central dysmyelination, Waardenburg syndrome, and Hirschsprung disease
Identifiers:
MONDO: MONDO:0012198; MedGen: C1836727; Orphanet: 163746; OMIM: 609136

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001573211Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely pathogenicde novoclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Kasturba Medical College, Manipal, Kasturba Medical College, Manipal, Manipal Academy of Higher Education, Manipal, India, SCV001573211.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024