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NM_000546.6(TP53):c.713G>A (p.Cys238Tyr) AND Gallbladder cancer

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Oct 30, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001374444.3

Allele description [Variation Report for NM_000546.6(TP53):c.713G>A (p.Cys238Tyr)]

NM_000546.6(TP53):c.713G>A (p.Cys238Tyr)

Gene:
TP53:tumor protein p53 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
17p13.1
Genomic location:
Preferred name:
NM_000546.6(TP53):c.713G>A (p.Cys238Tyr)
Other names:
p.C238Y:TGT>TAT
HGVS:
  • NC_000017.11:g.7674250C>T
  • NG_017013.2:g.18301G>A
  • NM_000546.6:c.713G>AMANE SELECT
  • NM_001126112.3:c.713G>A
  • NM_001126113.3:c.713G>A
  • NM_001126114.3:c.713G>A
  • NM_001126115.2:c.317G>A
  • NM_001126116.2:c.317G>A
  • NM_001126117.2:c.317G>A
  • NM_001126118.2:c.596G>A
  • NM_001276695.3:c.596G>A
  • NM_001276696.3:c.596G>A
  • NM_001276697.3:c.236G>A
  • NM_001276698.3:c.236G>A
  • NM_001276699.3:c.236G>A
  • NM_001276760.3:c.596G>A
  • NM_001276761.3:c.596G>A
  • NP_000537.3:p.Cys238Tyr
  • NP_000537.3:p.Cys238Tyr
  • NP_001119584.1:p.Cys238Tyr
  • NP_001119585.1:p.Cys238Tyr
  • NP_001119586.1:p.Cys238Tyr
  • NP_001119587.1:p.Cys106Tyr
  • NP_001119588.1:p.Cys106Tyr
  • NP_001119589.1:p.Cys106Tyr
  • NP_001119590.1:p.Cys199Tyr
  • NP_001263624.1:p.Cys199Tyr
  • NP_001263625.1:p.Cys199Tyr
  • NP_001263626.1:p.Cys79Tyr
  • NP_001263627.1:p.Cys79Tyr
  • NP_001263628.1:p.Cys79Tyr
  • NP_001263689.1:p.Cys199Tyr
  • NP_001263690.1:p.Cys199Tyr
  • LRG_321t1:c.713G>A
  • LRG_321:g.18301G>A
  • LRG_321p1:p.Cys238Tyr
  • NC_000017.10:g.7577568C>T
  • NM_000546.4:c.713G>A
  • NM_000546.5:c.713G>A
  • P04637:p.Cys238Tyr
  • p.C238Y
Protein change:
C106Y
Links:
UniProtKB: P04637#VAR_005967; dbSNP: rs730882005
NCBI 1000 Genomes Browser:
rs730882005
Molecular consequence:
  • NM_000546.6:c.713G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126112.3:c.713G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126113.3:c.713G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126114.3:c.713G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126115.2:c.317G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126116.2:c.317G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126117.2:c.317G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001126118.2:c.596G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276695.3:c.596G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276696.3:c.596G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276697.3:c.236G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276698.3:c.236G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276699.3:c.236G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276760.3:c.596G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001276761.3:c.596G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Gallbladder cancer
Identifiers:
MONDO: MONDO:0005411; MedGen: C0153452

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001571407Institute of Medical Sciences, Banaras Hindu University
no assertion criteria provided
Pathogenic
(Oct 30, 2020)
somaticresearch

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedsomaticyesnot providednot providednot providednot providednot providedresearch

Details of each submission

From Institute of Medical Sciences, Banaras Hindu University, SCV001571407.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedresearchnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1somaticyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Nov 3, 2024