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NM_000511.6(FUT2):c.923A>G (p.Asn308Ser) AND not provided

Germline classification:
Uncertain significance (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001357223.1

Allele description [Variation Report for NM_000511.6(FUT2):c.923A>G (p.Asn308Ser)]

NM_000511.6(FUT2):c.923A>G (p.Asn308Ser)

Gene:
FUT2:fucosyltransferase 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
19q13.33
Genomic location:
Preferred name:
NM_000511.6(FUT2):c.923A>G (p.Asn308Ser)
HGVS:
  • NC_000019.10:g.48703879A>G
  • NG_007511.1:g.12909A>G
  • NM_000511.6:c.923A>GMANE SELECT
  • NM_001097638.3:c.923A>G
  • NP_000502.4:p.Asn308Ser
  • NP_001091107.1:p.Asn308Ser
  • LRG_811t1:c.923A>G
  • LRG_811:g.12909A>G
  • LRG_811p1:p.Asn308Ser
  • NC_000019.9:g.49207136A>G
Protein change:
N308S
Links:
dbSNP: rs1406380167
NCBI 1000 Genomes Browser:
rs1406380167
Molecular consequence:
  • NM_000511.6:c.923A>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001097638.3:c.923A>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001552620Department of Pathology and Laboratory Medicine, Sinai Health System - The Canadian Open Genetics Repository (COGR)

See additional submitters

no assertion criteria provided
Uncertain significanceunknownclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Department of Pathology and Laboratory Medicine, Sinai Health System - The Canadian Open Genetics Repository (COGR), SCV001552620.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

The FUT2 p.Asn308Ser variant was not identified in the literature nor was it identified in ClinVar. The variant was identified in dbSNP (ID: rs1406380167). The variant was not identified in the following control databases: the 1000 Genomes Project, the NHLBI GO Exome Sequencing Project, or the Genome Aggregation Database (March 6, 2019, v2.1.1).The p.Asn308 residue is conserved across mammals and other organisms, and four out of five computational analyses (PolyPhen-2, SIFT, AlignGVGD, BLOSUM, MutationTaster) suggest that the variant may impact the protein; however, this information is not predictive enough to assume pathogenicity. The variant occurs outside of the splicing consensus sequence and 2 of 4 in silico or computational prediction software programs (SpliceSiteFinder, MaxEntScan, NNSPLICE, GeneSplicer) predict a greater than 10% difference in splicing; this is not very predictive of pathogenicity. In summary, based on the above information the clinical significance of this variant cannot be determined with certainty at this time. This variant is classified as a variant of uncertain significance.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Dec 24, 2023