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NM_000179.3(MSH6):c.3911G>A (p.Arg1304Lys) AND not provided

Germline classification:
Likely benign (2 submissions)
Last evaluated:
Jul 27, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001354037.4

Allele description [Variation Report for NM_000179.3(MSH6):c.3911G>A (p.Arg1304Lys)]

NM_000179.3(MSH6):c.3911G>A (p.Arg1304Lys)

Gene:
MSH6:mutS homolog 6 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
2p16.3
Genomic location:
Preferred name:
NM_000179.3(MSH6):c.3911G>A (p.Arg1304Lys)
Other names:
p.R1304K:AGG>AAG
HGVS:
  • NC_000002.12:g.47806561G>A
  • NG_007111.1:g.28415G>A
  • NG_008397.1:g.104115C>T
  • NM_000179.3:c.3911G>AMANE SELECT
  • NM_001281492.2:c.3521G>A
  • NM_001281493.2:c.3005G>A
  • NM_001281494.2:c.3005G>A
  • NP_000170.1:p.Arg1304Lys
  • NP_000170.1:p.Arg1304Lys
  • NP_001268421.1:p.Arg1174Lys
  • NP_001268422.1:p.Arg1002Lys
  • NP_001268423.1:p.Arg1002Lys
  • LRG_219t1:c.3911G>A
  • LRG_219:g.28415G>A
  • LRG_219p1:p.Arg1304Lys
  • NC_000002.11:g.48033700G>A
  • NM_000179.2:c.3911G>A
  • p.R1304K
Protein change:
R1002K
Links:
dbSNP: rs34625968
NCBI 1000 Genomes Browser:
rs34625968
Molecular consequence:
  • NM_000179.3:c.3911G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281492.2:c.3521G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281493.2:c.3005G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001281494.2:c.3005G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV000211365GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)
Likely benign
(Jul 27, 2020)
germlineclinical testing

Citation Link,

SCV000592658Department of Pathology and Laboratory Medicine, Sinai Health System - The Canadian Open Genetics Repository (COGR)

See additional submitters

no assertion criteria provided
Uncertain significanceunknownclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing
not providedunknownyes1not providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV000211365.12

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

This variant is associated with the following publications: (PMID: 28531214, 21153778, 23047549, 22290698)

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

From Department of Pathology and Laboratory Medicine, Sinai Health System - The Canadian Open Genetics Repository (COGR), SCV000592658.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Oct 8, 2024