NM_001367561.1(DOCK7):c.1393G>C (p.Ala465Pro) AND Developmental and epileptic encephalopathy, 23

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Aug 8, 2020
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001348244.7

Allele description [Variation Report for NM_001367561.1(DOCK7):c.1393G>C (p.Ala465Pro)]

NM_001367561.1(DOCK7):c.1393G>C (p.Ala465Pro)

Gene:

DOCK7:dedicator of cytokinesis 7 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

1p31.3

Genomic location:

Preferred name:

NM_001367561.1(DOCK7):c.1393G>C (p.Ala465Pro)

HGVS:

NC_000001.11:g.62625291C>G
NG_033073.2:g.68078G>C
NM_001271999.2:c.1393G>C
NM_001272000.2:c.1393G>C
NM_001272001.2:c.1393G>C
NM_001272002.2:c.1393G>C
NM_001330614.2:c.1393G>C
NM_001367561.1:c.1393G>CMANE SELECT
NM_033407.4:c.1393G>C
NP_001258928.1:p.Ala465Pro
NP_001258929.1:p.Ala465Pro
NP_001258930.1:p.Ala465Pro
NP_001258931.1:p.Ala465Pro
NP_001317543.1:p.Ala465Pro
NP_001354490.1:p.Ala465Pro
NP_212132.2:p.Ala465Pro
NC_000001.10:g.63090962C>G

Protein change:

A465P

Links:

dbSNP: rs370549803

NCBI 1000 Genomes Browser:

rs370549803

Molecular consequence:

NM_001271999.2:c.1393G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001272000.2:c.1393G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001272001.2:c.1393G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001272002.2:c.1393G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001330614.2:c.1393G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_001367561.1:c.1393G>C - missense variant - [Sequence Ontology: SO:0001583]
NM_033407.4:c.1393G>C - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Developmental and epileptic encephalopathy, 23 (DEE23)
Synonyms:: Epileptic encephalopathy, early infantile, 23
Identifiers:: MONDO: MONDO:0014371; MedGen: C4014492; Orphanet: 411986; OMIM: 615859

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001542538	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (Aug 8, 2020)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001542538

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(Aug 8, 2020)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001542538.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Possibly Damaging"; Align-GVGD: "Class C0"). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant has not been reported in the literature in individuals with DOCK7-related conditions. This variant is present in population databases (rs370549803, ExAC 0.001%). This sequence change replaces alanine with proline at codon 465 of the DOCK7 protein (p.Ala465Pro). The alanine residue is moderately conserved and there is a small physicochemical difference between alanine and proline.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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