NM_000053.4(ATP7B):c.1326G>T (p.Gly442=) AND Wilson disease

This record was updated by the submitter. Please see the current version.

Germline classification:: Likely benign (2 submissions)
Last evaluated:: Aug 4, 2023
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001343041.8

Allele description

NM_000053.4(ATP7B):c.1326G>T (p.Gly442=)

Gene:

ATP7B:ATPase copper transporting beta [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

13q14.3

Genomic location:

Preferred name:

NM_000053.4(ATP7B):c.1326G>T (p.Gly442=)

HGVS:

NC_000013.11:g.51970709C>A
NG_008806.1:g.45786G>T
NM_000053.4:c.1326G>TMANE SELECT
NM_001005918.3:c.1326G>T
NM_001243182.2:c.993G>T
NM_001330578.2:c.1326G>T
NM_001330579.2:c.1326G>T
NP_000044.2:p.Gly442=
NP_001005918.1:p.Gly442=
NP_001230111.1:p.Gly331=
NP_001317507.1:p.Gly442=
NP_001317508.1:p.Gly442=
NC_000013.10:g.52544845C>A

Links:

dbSNP: rs1371066375

NCBI 1000 Genomes Browser:

rs1371066375

Molecular consequence:

NM_000053.4:c.1326G>T - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001005918.3:c.1326G>T - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001243182.2:c.993G>T - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001330578.2:c.1326G>T - synonymous variant - [Sequence Ontology: SO:0001819]
NM_001330579.2:c.1326G>T - synonymous variant - [Sequence Ontology: SO:0001819]

Condition(s)

Name:: Wilson disease (WND)
Synonyms:: Wilson's disease; Hepatolenticular degeneration
Identifiers:: MONDO: MONDO:0010200; MedGen: C0019202; Orphanet: 905; OMIM: 277900

Recent activity

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GSM2317728[Accession] (4)
GEO DataSets
malic enzyme [Ehrlichia chaffeensis str. Arkansas]
malic enzyme [Ehrlichia chaffeensis str. Arkansas]
gi|88658354|gnl|REF_tigr|ECH0175|re 507000.1|

Protein
eyes absent homolog 3 isoform 4 [Mus musculus]
eyes absent homolog 3 isoform 4 [Mus musculus]
gi|2216732105|ref|NP_001390684.1|

Protein
Homo sapiens
Homo sapiens
Expression profiling in breast cancer brain metastases compared to breast cancers and primary brain tumors

BioProject
isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [Antechin...
isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial isoform X1 [Antechinus flavipes]
gi|2328103462|ref|XP_051825072.1|

Protein

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001536997	Invitae	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Likely benign (Aug 4, 2023)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]
SCV002087878	Natera, Inc.	no assertion criteria provided	Uncertain significance (Jan 27, 2021)	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001536997

Invitae

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Likely benign
(Aug 4, 2023)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

SCV002087878

Natera, Inc.

no assertion criteria provided

Uncertain significance
(Jan 27, 2021)

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Invitae, SCV001536997.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

From Natera, Inc., SCV002087878.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Feb 28, 2024

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