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NM_014317.5(PDSS1):c.1164_1165del (p.Ile388fs) AND Deafness-encephaloneuropathy-obesity-valvulopathy syndrome

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Jun 26, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001335650.1

Allele description [Variation Report for NM_014317.5(PDSS1):c.1164_1165del (p.Ile388fs)]

NM_014317.5(PDSS1):c.1164_1165del (p.Ile388fs)

Gene:
PDSS1:decaprenyl diphosphate synthase subunit 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
10p12.1
Genomic location:
Preferred name:
NM_014317.5(PDSS1):c.1164_1165del (p.Ile388fs)
HGVS:
  • NC_000010.11:g.26746389_26746390del
  • NG_008972.2:g.53724_53725del
  • NG_030025.1:g.119698_119699del
  • NM_001321978.2:c.*52_*53del
  • NM_001321979.2:c.654_655del
  • NM_014317.5:c.1164_1165delMANE SELECT
  • NP_001308908.1:p.Ile218fs
  • NP_055132.2:p.Ile388fs
  • NC_000010.10:g.27035318_27035319del
  • NM_014317.3:c.1164_1165delAA
Protein change:
I218fs
Links:
dbSNP: rs1425736863
NCBI 1000 Genomes Browser:
rs1425736863
Molecular consequence:
  • NM_001321978.2:c.*52_*53del - 3 prime UTR variant - [Sequence Ontology: SO:0001624]
  • NM_001321979.2:c.654_655del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_014317.5:c.1164_1165del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Deafness-encephaloneuropathy-obesity-valvulopathy syndrome
Synonyms:
Coenzyme Q10 deficiency, primary, 2
Identifiers:
MONDO: MONDO:0013837; MedGen: C3553354; Orphanet: 254898; OMIM: 614651

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001528841Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Jun 26, 2018) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics, SCV001528841.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was determined to be pathogenic according to ACMG Guidelines, 2015 [PMID:25741868].

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 23, 2023