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NM_001384732.1(CPLANE1):c.8140C>T (p.Arg2714Ter) AND Orofaciodigital syndrome type 6

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Nov 18, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001332490.1

Allele description [Variation Report for NM_001384732.1(CPLANE1):c.8140C>T (p.Arg2714Ter)]

NM_001384732.1(CPLANE1):c.8140C>T (p.Arg2714Ter)

Gene:
CPLANE1:ciliogenesis and planar polarity effector complex subunit 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5p13.2
Genomic location:
Preferred name:
NM_001384732.1(CPLANE1):c.8140C>T (p.Arg2714Ter)
HGVS:
  • NC_000005.10:g.37153973G>A
  • NG_032772.2:g.100456C>T
  • NM_001384732.1:c.8140C>TMANE SELECT
  • NM_023073.4:c.7978C>T
  • NP_001371661.1:p.Arg2714Ter
  • NP_075561.3:p.Arg2660Ter
  • NP_075561.3:p.Arg2660Ter
  • NC_000005.9:g.37154075G>A
  • NM_023073.3:c.7978C>T
Protein change:
R2660*
Links:
dbSNP: rs147416429
NCBI 1000 Genomes Browser:
rs147416429
Molecular consequence:
  • NM_001384732.1:c.8140C>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_023073.4:c.7978C>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Orofaciodigital syndrome type 6 (OFD6)
Synonyms:
OFDS VI; POLYDACTYLY, CLEFT LIP/PALATE OR LINGUAL LUMP, AND PSYCHOMOTOR RETARDATION; VARADI SYNDROME; See all synonyms [MedGen]
Identifiers:
MONDO: MONDO:0010176; MedGen: C2745997; Orphanet: 2754; OMIM: 277170

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001524830Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Pathogenic
(Nov 18, 2019) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics, SCV001524830.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was determined to be pathogenic according to ACMG Guidelines, 2015 [PMID:25741868].

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024