U.S. flag

An official website of the United States government

NM_181523.3(PIK3R1):c.1344del (p.Lys448fs) AND Immunodeficiency 36

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jan 14, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001328801.1

Allele description [Variation Report for NM_181523.3(PIK3R1):c.1344del (p.Lys448fs)]

NM_181523.3(PIK3R1):c.1344del (p.Lys448fs)

Gene:
PIK3R1:phosphoinositide-3-kinase regulatory subunit 1 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
5q13.1
Genomic location:
Preferred name:
NM_181523.3(PIK3R1):c.1344del (p.Lys448fs)
HGVS:
  • NC_000005.10:g.68293753del
  • NG_012849.2:g.82998del
  • NM_001242466.2:c.255del
  • NM_181504.4:c.534del
  • NM_181523.3:c.1344delMANE SELECT
  • NM_181524.2:c.444del
  • NP_001229395.1:p.Lys85fs
  • NP_852556.2:p.Lys178fs
  • NP_852664.1:p.Lys448fs
  • NP_852665.1:p.Lys148fs
  • LRG_453t1:c.1344del
  • LRG_453:g.82998del
  • LRG_453p1:p.Lys448fs
  • NC_000005.9:g.67589576del
  • NC_000005.9:g.67589581del
  • NM_181523.2:c.1344delA
  • NM_181523.3:c.1344delAMANE SELECT
Protein change:
K148fs
Links:
dbSNP: rs1289537429
NCBI 1000 Genomes Browser:
rs1289537429
Molecular consequence:
  • NM_001242466.2:c.255del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_181504.4:c.534del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_181523.3:c.1344del - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_181524.2:c.444del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Immunodeficiency 36 (IMD36)
Synonyms:
IMMUNODEFICIENCY 36 WITH LYMPHOPROLIFERATION
Identifiers:
MONDO: MONDO:0014453; MedGen: C4014934; Orphanet: 397596; OMIM: 616005

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001520008Baylor Genetics
criteria provided, single submitter

(ACMG Guidelines, 2015)		Likely pathogenic
(Jan 14, 2019) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics, SCV001520008.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was determined to be likely pathogenic according to ACMG Guidelines, 2015 [PMID:25741868].

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024