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NM_000551.4(VHL):c.228C>G (p.Phe76Leu) AND multiple conditions

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 13, 2023
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001323711.7

Allele description [Variation Report for NM_000551.4(VHL):c.228C>G (p.Phe76Leu)]

NM_000551.4(VHL):c.228C>G (p.Phe76Leu)

Gene:
VHL:von Hippel-Lindau tumor suppressor [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
3p25.3
Genomic location:
Preferred name:
NM_000551.4(VHL):c.228C>G (p.Phe76Leu)
HGVS:
  • NC_000003.12:g.10142075C>G
  • NG_008212.3:g.5441C>G
  • NM_000551.4:c.228C>GMANE SELECT
  • NM_001354723.2:c.228C>G
  • NM_198156.3:c.228C>G
  • NP_000542.1:p.Phe76Leu
  • NP_001341652.1:p.Phe76Leu
  • NP_937799.1:p.Phe76Leu
  • LRG_322:g.5441C>G
  • NC_000003.11:g.10183759C>G
Protein change:
F76L
Links:
dbSNP: rs1575921940
NCBI 1000 Genomes Browser:
rs1575921940
Molecular consequence:
  • NM_000551.4:c.228C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354723.2:c.228C>G - missense variant - [Sequence Ontology: SO:0001583]
  • NM_198156.3:c.228C>G - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Chuvash polycythemia
Synonyms:
POLYCYTHEMIA, VHL-DEPENDENT; Erythrocytosis, familial, 2
Identifiers:
MONDO: MONDO:0009892; MedGen: C1837915; Orphanet: 238557; OMIM: 263400
Name:
Von Hippel-Lindau syndrome (VHLS)
Synonyms:
VHL syndrome; Von Hippel-Lindau
Identifiers:
MONDO: MONDO:0008667; MedGen: C0019562; Orphanet: 892; OMIM: 193300

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001514638Labcorp Genetics (formerly Invitae), Labcorp
criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))
Uncertain significance
(Mar 13, 2023)
germlineclinical testing

PubMed (4)
[See all records that cite these PMIDs]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Improved detection of germline mutations in the von Hippel-Lindau disease tumor suppressor gene.

Stolle C, Glenn G, Zbar B, Humphrey JS, Choyke P, Walther M, Pack S, Hurley K, Andrey C, Klausner R, Linehan WM.

Hum Mutat. 1998;12(6):417-23.

PubMed [citation]
PMID:
9829911

[von Hippel-Lindau syndrome: molecular diagnosis of two Lebanese families and analysis of the genotype-phenotype correlation].

Medlej-Hashim M, Leclercq A, Salem N, Moukarzel M, Merhej S, Pigny P, Megarbane A.

J Med Liban. 2004 Jan-Mar;52(1):51-4. French.

PubMed [citation]
PMID:
15881703
See all PubMed Citations (4)

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001514638.4

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (4)

Description

This sequence change replaces phenylalanine, which is neutral and non-polar, with leucine, which is neutral and non-polar, at codon 76 of the VHL protein (p.Phe76Leu). This variant is not present in population databases (gnomAD no frequency). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This variant disrupts the p.Phe76 amino acid residue in VHL. Other variant(s) that disrupt this residue have been observed in individuals with VHL-related conditions (PMID: 9829911, 15881703), which suggests that this may be a clinically significant amino acid residue. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt VHL protein function. ClinVar contains an entry for this variant (Variation ID: 1023630). This missense change has been observed in individual(s) with von Hippel Lindau syndome (PMID: 7728151).

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024