NM_005045.4(RELN):c.6470C>T (p.Pro2157Leu) AND multiple conditions

Germline classification:: Uncertain significance (1 submission)
Last evaluated:: Jun 27, 2022
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001297983.7

Allele description [Variation Report for NM_005045.4(RELN):c.6470C>T (p.Pro2157Leu)]

NM_005045.4(RELN):c.6470C>T (p.Pro2157Leu)

Gene:

RELN:reelin [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

7q22.1

Genomic location:

Preferred name:

NM_005045.4(RELN):c.6470C>T (p.Pro2157Leu)

HGVS:

NC_000007.14:g.103545177G>A
NG_011877.2:g.449340C>T
NM_005045.4:c.6470C>TMANE SELECT
NM_173054.3:c.6470C>T
NP_005036.2:p.Pro2157Leu
NP_774959.1:p.Pro2157Leu
NC_000007.13:g.103185624G>A
NG_011877.1:g.449340C>T

Protein change:

P2157L

Links:

dbSNP: rs1412766990

NCBI 1000 Genomes Browser:

rs1412766990

Molecular consequence:

NM_005045.4:c.6470C>T - missense variant - [Sequence Ontology: SO:0001583]
NM_173054.3:c.6470C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Norman-Roberts syndrome (LIS2)
Synonyms:: Lissencephaly 2; Lissencephaly syndrome Norman-Roberts type; Lissencephaly 2 (Norman-Roberts type)
Identifiers:: MONDO: MONDO:0009760; MedGen: C0796089; Orphanet: 89844; OMIM: 257320

Name:: Familial temporal lobe epilepsy 7
Identifiers:: MONDO: MONDO:0014639; MedGen: C4225327; Orphanet: 101046; OMIM: 616436

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001487023	Labcorp Genetics (formerly Invitae), Labcorp	criteria provided, single submitter (Invitae Variant Classification Sherloc (09022015))	Uncertain significance (Jun 27, 2022)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001487023

Labcorp Genetics (formerly Invitae), Labcorp

criteria provided, single submitter

(Invitae Variant Classification Sherloc (09022015))

Uncertain significance
(Jun 27, 2022)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.

Nykamp K, Anderson M, Powers M, Garcia J, Herrera B, Ho YY, Kobayashi Y, Patil N, Thusberg J, Westbrook M; Invitae Clinical Genomics Group., Topper S.

Genet Med. 2017 Oct;19(10):1105-1117. doi: 10.1038/gim.2017.37. Epub 2017 May 11. Erratum in: Genet Med. 2020 Jan;22(1):240. doi: 10.1038/s41436-019-0624-9.

PubMed [citation]

PMID:: 28492532
PMCID:: PMC5632818

Details of each submission

From Labcorp Genetics (formerly Invitae), Labcorp, SCV001487023.4

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). ClinVar contains an entry for this variant (Variation ID: 1001654). This variant has not been reported in the literature in individuals affected with RELN-related conditions. This variant is not present in population databases (gnomAD no frequency). This sequence change replaces proline, which is neutral and non-polar, with leucine, which is neutral and non-polar, at codon 2157 of the RELN protein (p.Pro2157Leu).

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Sep 29, 2024

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