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NM_000038.6(APC):c.6907G>T (p.Gly2303Ter) AND Colorectal cancer

Germline classification:
Pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001293810.1

Allele description [Variation Report for NM_000038.6(APC):c.6907G>T (p.Gly2303Ter)]

NM_000038.6(APC):c.6907G>T (p.Gly2303Ter)

Gene:
APC:APC regulator of WNT signaling pathway [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
5q22.2
Genomic location:
Preferred name:
NM_000038.6(APC):c.6907G>T (p.Gly2303Ter)
HGVS:
  • NC_000005.10:g.112842501G>T
  • NG_008481.4:g.154981G>T
  • NM_000038.6:c.6907G>TMANE SELECT
  • NM_001127510.3:c.6907G>T
  • NM_001127511.3:c.6853G>T
  • NM_001354895.2:c.6907G>T
  • NM_001354896.2:c.6961G>T
  • NM_001354897.2:c.6937G>T
  • NM_001354898.2:c.6832G>T
  • NM_001354899.2:c.6823G>T
  • NM_001354900.2:c.6784G>T
  • NM_001354901.2:c.6730G>T
  • NM_001354902.2:c.6634G>T
  • NM_001354903.2:c.6604G>T
  • NM_001354904.2:c.6529G>T
  • NM_001354905.2:c.6427G>T
  • NM_001354906.2:c.6058G>T
  • NP_000029.2:p.Gly2303Ter
  • NP_001120982.1:p.Gly2303Ter
  • NP_001120983.2:p.Gly2285Ter
  • NP_001341824.1:p.Gly2303Ter
  • NP_001341825.1:p.Gly2321Ter
  • NP_001341826.1:p.Gly2313Ter
  • NP_001341827.1:p.Gly2278Ter
  • NP_001341828.1:p.Gly2275Ter
  • NP_001341829.1:p.Gly2262Ter
  • NP_001341830.1:p.Gly2244Ter
  • NP_001341831.1:p.Gly2212Ter
  • NP_001341832.1:p.Gly2202Ter
  • NP_001341833.1:p.Gly2177Ter
  • NP_001341834.1:p.Gly2143Ter
  • NP_001341835.1:p.Gly2020Ter
  • LRG_130:g.154981G>T
  • NC_000005.9:g.112178198G>T
Protein change:
G2020*
Links:
dbSNP: rs544549596
NCBI 1000 Genomes Browser:
rs544549596
Molecular consequence:
  • NM_000038.6:c.6907G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001127510.3:c.6907G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001127511.3:c.6853G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354895.2:c.6907G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354896.2:c.6961G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354897.2:c.6937G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354898.2:c.6832G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354899.2:c.6823G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354900.2:c.6784G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354901.2:c.6730G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354902.2:c.6634G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354903.2:c.6604G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354904.2:c.6529G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354905.2:c.6427G>T - nonsense - [Sequence Ontology: SO:0001587]
  • NM_001354906.2:c.6058G>T - nonsense - [Sequence Ontology: SO:0001587]

Condition(s)

Name:
Colorectal cancer
Synonyms:
Colorectal cancer, somatic; Malignant Colorectal Neoplasm
Identifiers:
MONDO: MONDO:0005575; MedGen: C0346629; OMIM: 114500

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001481741Genomic Center, National Cancer Institute
no assertion criteria provided
Pathogenicgermlinecase-control

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedcase-control

Details of each submission

From Genomic Center, National Cancer Institute, SCV001481741.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedcase-controlnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providedwhole blood and tissuenot providednot providednot providednot providednot provided

Last Updated: Jul 16, 2023