NM_007294.4(BRCA1):c.122A>T (p.His41Leu) AND Fanconi anemia, complementation group S
- Germline classification:
- Likely pathogenic (1 submission)
- Last evaluated:
- Jan 13, 2020
- Review status:
- 1 star out of maximum of 4 starscriteria provided, single submitter
- Somatic classification
of clinical impact: - None
- Review status:
- (0/4) 0 stars out of maximum of 4 starsno assertion criteria provided
- Somatic classification
of oncogenicity: - None
- Review status:
- (0/4) 0 stars out of maximum of 4 starsno assertion criteria provided
- Record status:
- current
- Accession:
- RCV001292947.2
Allele description [Variation Report for NM_007294.4(BRCA1):c.122A>T (p.His41Leu)]
NM_007294.4(BRCA1):c.122A>T (p.His41Leu)
- Gene:
- BRCA1:BRCA1 DNA repair associated [Gene - OMIM - HGNC]
- Variant type:
- single nucleotide variant
- Cytogenetic location:
- 17q21.31
- Genomic location:
- Preferred name:
- NM_007294.4(BRCA1):c.122A>T (p.His41Leu)
- HGVS:
- NC_000017.11:g.43115738T>A
- NG_005905.2:g.102246A>T
- NM_001407571.1:c.-67A>T
- NM_001407581.1:c.122A>T
- NM_001407582.1:c.122A>T
- NM_001407583.1:c.122A>T
- NM_001407585.1:c.122A>T
- NM_001407587.1:c.122A>T
- NM_001407590.1:c.122A>T
- NM_001407591.1:c.122A>T
- NM_001407593.1:c.122A>T
- NM_001407594.1:c.122A>T
- NM_001407596.1:c.122A>T
- NM_001407597.1:c.122A>T
- NM_001407598.1:c.122A>T
- NM_001407602.1:c.122A>T
- NM_001407603.1:c.122A>T
- NM_001407605.1:c.122A>T
- NM_001407610.1:c.122A>T
- NM_001407611.1:c.122A>T
- NM_001407612.1:c.122A>T
- NM_001407613.1:c.122A>T
- NM_001407614.1:c.122A>T
- NM_001407615.1:c.122A>T
- NM_001407616.1:c.122A>T
- NM_001407617.1:c.122A>T
- NM_001407618.1:c.122A>T
- NM_001407619.1:c.122A>T
- NM_001407620.1:c.122A>T
- NM_001407621.1:c.122A>T
- NM_001407622.1:c.122A>T
- NM_001407623.1:c.122A>T
- NM_001407624.1:c.122A>T
- NM_001407625.1:c.122A>T
- NM_001407626.1:c.122A>T
- NM_001407627.1:c.122A>T
- NM_001407628.1:c.122A>T
- NM_001407629.1:c.122A>T
- NM_001407630.1:c.122A>T
- NM_001407631.1:c.122A>T
- NM_001407632.1:c.122A>T
- NM_001407633.1:c.122A>T
- NM_001407634.1:c.122A>T
- NM_001407635.1:c.122A>T
- NM_001407636.1:c.122A>T
- NM_001407637.1:c.122A>T
- NM_001407638.1:c.122A>T
- NM_001407639.1:c.122A>T
- NM_001407640.1:c.122A>T
- NM_001407641.1:c.122A>T
- NM_001407642.1:c.122A>T
- NM_001407644.1:c.122A>T
- NM_001407645.1:c.122A>T
- NM_001407646.1:c.122A>T
- NM_001407647.1:c.122A>T
- NM_001407648.1:c.122A>T
- NM_001407649.1:c.122A>T
- NM_001407652.1:c.122A>T
- NM_001407653.1:c.122A>T
- NM_001407654.1:c.122A>T
- NM_001407655.1:c.122A>T
- NM_001407656.1:c.122A>T
- NM_001407657.1:c.122A>T
- NM_001407658.1:c.122A>T
- NM_001407659.1:c.122A>T
- NM_001407660.1:c.122A>T
- NM_001407661.1:c.122A>T
- NM_001407662.1:c.122A>T
- NM_001407663.1:c.122A>T
- NM_001407664.1:c.122A>T
- NM_001407665.1:c.122A>T
- NM_001407666.1:c.122A>T
- NM_001407667.1:c.122A>T
- NM_001407668.1:c.122A>T
- NM_001407669.1:c.122A>T
- NM_001407670.1:c.122A>T
- NM_001407671.1:c.122A>T
- NM_001407672.1:c.122A>T
- NM_001407673.1:c.122A>T
- NM_001407674.1:c.122A>T
- NM_001407675.1:c.122A>T
- NM_001407676.1:c.122A>T
- NM_001407677.1:c.122A>T
- NM_001407678.1:c.122A>T
- NM_001407679.1:c.122A>T
- NM_001407680.1:c.122A>T
- NM_001407681.1:c.122A>T
- NM_001407682.1:c.122A>T
- NM_001407683.1:c.122A>T
- NM_001407684.1:c.122A>T
- NM_001407685.1:c.122A>T
- NM_001407686.1:c.122A>T
- NM_001407687.1:c.122A>T
- NM_001407688.1:c.122A>T
- NM_001407689.1:c.122A>T
- NM_001407690.1:c.122A>T
- NM_001407691.1:c.122A>T
- NM_001407694.1:c.-136A>T
- NM_001407695.1:c.-140A>T
- NM_001407696.1:c.-136A>T
- NM_001407697.1:c.-20A>T
- NM_001407724.1:c.-136A>T
- NM_001407725.1:c.-20A>T
- NM_001407727.1:c.-136A>T
- NM_001407728.1:c.-20A>T
- NM_001407729.1:c.-20A>T
- NM_001407730.1:c.-20A>T
- NM_001407731.1:c.-136A>T
- NM_001407733.1:c.-136A>T
- NM_001407734.1:c.-20A>T
- NM_001407735.1:c.-20A>T
- NM_001407737.1:c.-20A>T
- NM_001407739.1:c.-20A>T
- NM_001407740.1:c.-20A>T
- NM_001407741.1:c.-20A>T
- NM_001407743.1:c.-20A>T
- NM_001407745.1:c.-20A>T
- NM_001407746.1:c.-136A>T
- NM_001407748.1:c.-20A>T
- NM_001407749.1:c.-136A>T
- NM_001407752.1:c.-20A>T
- NM_001407838.1:c.-20A>T
- NM_001407839.1:c.-20A>T
- NM_001407841.1:c.-16A>T
- NM_001407842.1:c.-136A>T
- NM_001407843.1:c.-136A>T
- NM_001407844.1:c.-20A>T
- NM_001407846.1:c.-20A>T
- NM_001407847.1:c.-20A>T
- NM_001407848.1:c.-20A>T
- NM_001407850.1:c.-20A>T
- NM_001407851.1:c.-20A>T
- NM_001407853.1:c.-67A>T
- NM_001407854.1:c.122A>T
- NM_001407858.1:c.122A>T
- NM_001407859.1:c.122A>T
- NM_001407860.1:c.122A>T
- NM_001407861.1:c.122A>T
- NM_001407862.1:c.122A>T
- NM_001407863.1:c.122A>T
- NM_001407874.1:c.122A>T
- NM_001407875.1:c.122A>T
- NM_001407879.1:c.-67A>T
- NM_001407882.1:c.-67A>T
- NM_001407884.1:c.-67A>T
- NM_001407885.1:c.-67A>T
- NM_001407886.1:c.-67A>T
- NM_001407887.1:c.-67A>T
- NM_001407889.1:c.-183A>T
- NM_001407894.1:c.-67A>T
- NM_001407895.1:c.-67A>T
- NM_001407896.1:c.-67A>T
- NM_001407897.1:c.-67A>T
- NM_001407899.1:c.-67A>T
- NM_001407900.1:c.-183A>T
- NM_001407904.1:c.-67A>T
- NM_001407906.1:c.-67A>T
- NM_001407907.1:c.-67A>T
- NM_001407908.1:c.-67A>T
- NM_001407909.1:c.-67A>T
- NM_001407910.1:c.-67A>T
- NM_001407915.1:c.-67A>T
- NM_001407916.1:c.-67A>T
- NM_001407917.1:c.-67A>T
- NM_001407918.1:c.-67A>T
- NM_001407919.1:c.122A>T
- NM_001407920.1:c.-20A>T
- NM_001407921.1:c.-20A>T
- NM_001407922.1:c.-20A>T
- NM_001407923.1:c.-20A>T
- NM_001407926.1:c.-20A>T
- NM_001407927.1:c.-20A>T
- NM_001407930.1:c.-136A>T
- NM_001407933.1:c.-20A>T
- NM_001407934.1:c.-20A>T
- NM_001407935.1:c.-20A>T
- NM_001407937.1:c.122A>T
- NM_001407938.1:c.122A>T
- NM_001407939.1:c.122A>T
- NM_001407940.1:c.122A>T
- NM_001407941.1:c.122A>T
- NM_001407942.1:c.-136A>T
- NM_001407943.1:c.-20A>T
- NM_001407944.1:c.-20A>T
- NM_001407946.1:c.-67A>T
- NM_001407947.1:c.-67A>T
- NM_001407948.1:c.-67A>T
- NM_001407949.1:c.-67A>T
- NM_001407950.1:c.-67A>T
- NM_001407951.1:c.-67A>T
- NM_001407952.1:c.-67A>T
- NM_001407953.1:c.-67A>T
- NM_001407954.1:c.-67A>T
- NM_001407955.1:c.-67A>T
- NM_001407956.1:c.-67A>T
- NM_001407957.1:c.-67A>T
- NM_001407958.1:c.-67A>T
- NM_001407960.1:c.-182A>T
- NM_001407962.1:c.-182A>T
- NM_001407964.1:c.-20A>T
- NM_001407965.1:c.-298A>T
- NM_001407968.1:c.122A>T
- NM_001407969.1:c.122A>T
- NM_001407970.1:c.122A>T
- NM_001407971.1:c.122A>T
- NM_001407972.1:c.122A>T
- NM_001407973.1:c.122A>T
- NM_001407974.1:c.122A>T
- NM_001407975.1:c.122A>T
- NM_001407976.1:c.122A>T
- NM_001407977.1:c.122A>T
- NM_001407978.1:c.122A>T
- NM_001407979.1:c.122A>T
- NM_001407980.1:c.122A>T
- NM_001407981.1:c.122A>T
- NM_001407982.1:c.122A>T
- NM_001407983.1:c.122A>T
- NM_001407984.1:c.122A>T
- NM_001407985.1:c.122A>T
- NM_001407986.1:c.122A>T
- NM_001407990.1:c.122A>T
- NM_001407991.1:c.122A>T
- NM_001407992.1:c.122A>T
- NM_001407993.1:c.122A>T
- NM_001408392.1:c.122A>T
- NM_001408396.1:c.122A>T
- NM_001408397.1:c.122A>T
- NM_001408398.1:c.122A>T
- NM_001408399.1:c.122A>T
- NM_001408400.1:c.122A>T
- NM_001408401.1:c.122A>T
- NM_001408402.1:c.122A>T
- NM_001408403.1:c.122A>T
- NM_001408404.1:c.122A>T
- NM_001408406.1:c.122A>T
- NM_001408407.1:c.122A>T
- NM_001408408.1:c.122A>T
- NM_001408409.1:c.122A>T
- NM_001408410.1:c.-20A>T
- NM_001408411.1:c.122A>T
- NM_001408412.1:c.122A>T
- NM_001408413.1:c.122A>T
- NM_001408414.1:c.122A>T
- NM_001408415.1:c.122A>T
- NM_001408416.1:c.122A>T
- NM_001408418.1:c.122A>T
- NM_001408419.1:c.122A>T
- NM_001408420.1:c.122A>T
- NM_001408421.1:c.122A>T
- NM_001408422.1:c.122A>T
- NM_001408423.1:c.122A>T
- NM_001408424.1:c.122A>T
- NM_001408425.1:c.122A>T
- NM_001408426.1:c.122A>T
- NM_001408427.1:c.122A>T
- NM_001408428.1:c.122A>T
- NM_001408429.1:c.122A>T
- NM_001408430.1:c.122A>T
- NM_001408431.1:c.122A>T
- NM_001408432.1:c.122A>T
- NM_001408433.1:c.122A>T
- NM_001408434.1:c.122A>T
- NM_001408435.1:c.122A>T
- NM_001408436.1:c.122A>T
- NM_001408437.1:c.122A>T
- NM_001408438.1:c.122A>T
- NM_001408439.1:c.122A>T
- NM_001408440.1:c.122A>T
- NM_001408441.1:c.122A>T
- NM_001408442.1:c.122A>T
- NM_001408443.1:c.122A>T
- NM_001408444.1:c.122A>T
- NM_001408445.1:c.122A>T
- NM_001408446.1:c.122A>T
- NM_001408447.1:c.122A>T
- NM_001408448.1:c.122A>T
- NM_001408450.1:c.122A>T
- NM_001408452.1:c.-20A>T
- NM_001408453.1:c.-20A>T
- NM_001408455.1:c.-136A>T
- NM_001408456.1:c.-136A>T
- NM_001408458.1:c.-20A>T
- NM_001408462.1:c.-20A>T
- NM_001408463.1:c.-20A>T
- NM_001408465.1:c.-140A>T
- NM_001408466.1:c.-20A>T
- NM_001408468.1:c.-136A>T
- NM_001408469.1:c.-20A>T
- NM_001408470.1:c.-20A>T
- NM_001408472.1:c.122A>T
- NM_001408473.1:c.122A>T
- NM_001408474.1:c.122A>T
- NM_001408475.1:c.122A>T
- NM_001408476.1:c.122A>T
- NM_001408478.1:c.-67A>T
- NM_001408479.1:c.-67A>T
- NM_001408480.1:c.-67A>T
- NM_001408481.1:c.-67A>T
- NM_001408482.1:c.-67A>T
- NM_001408483.1:c.-67A>T
- NM_001408484.1:c.-67A>T
- NM_001408485.1:c.-67A>T
- NM_001408489.1:c.-67A>T
- NM_001408490.1:c.-67A>T
- NM_001408491.1:c.-67A>T
- NM_001408492.1:c.-183A>T
- NM_001408493.1:c.-67A>T
- NM_001408494.1:c.122A>T
- NM_001408495.1:c.122A>T
- NM_001408497.1:c.-20A>T
- NM_001408499.1:c.-20A>T
- NM_001408500.1:c.-20A>T
- NM_001408501.1:c.-136A>T
- NM_001408502.1:c.-67A>T
- NM_001408503.1:c.-20A>T
- NM_001408504.1:c.-20A>T
- NM_001408505.1:c.-20A>T
- NM_001408506.1:c.-67A>T
- NM_001408507.1:c.-67A>T
- NM_001408508.1:c.-67A>T
- NM_001408509.1:c.-67A>T
- NM_001408510.1:c.-182A>T
- NM_001408512.1:c.-182A>T
- NM_001408513.1:c.-67A>T
- NM_001408514.1:c.-67A>T
- NM_007294.4:c.122A>TMANE SELECT
- NM_007297.4:c.-8+8279A>T
- NM_007298.4:c.122A>T
- NM_007299.4:c.122A>T
- NM_007300.4:c.122A>T
- NM_007304.2:c.122A>T
- NP_001394510.1:p.His41Leu
- NP_001394511.1:p.His41Leu
- NP_001394512.1:p.His41Leu
- NP_001394514.1:p.His41Leu
- NP_001394516.1:p.His41Leu
- NP_001394519.1:p.His41Leu
- NP_001394520.1:p.His41Leu
- NP_001394522.1:p.His41Leu
- NP_001394523.1:p.His41Leu
- NP_001394525.1:p.His41Leu
- NP_001394526.1:p.His41Leu
- NP_001394527.1:p.His41Leu
- NP_001394531.1:p.His41Leu
- NP_001394532.1:p.His41Leu
- NP_001394534.1:p.His41Leu
- NP_001394539.1:p.His41Leu
- NP_001394540.1:p.His41Leu
- NP_001394541.1:p.His41Leu
- NP_001394542.1:p.His41Leu
- NP_001394543.1:p.His41Leu
- NP_001394544.1:p.His41Leu
- NP_001394545.1:p.His41Leu
- NP_001394546.1:p.His41Leu
- NP_001394547.1:p.His41Leu
- NP_001394548.1:p.His41Leu
- NP_001394549.1:p.His41Leu
- NP_001394550.1:p.His41Leu
- NP_001394551.1:p.His41Leu
- NP_001394552.1:p.His41Leu
- NP_001394553.1:p.His41Leu
- NP_001394554.1:p.His41Leu
- NP_001394555.1:p.His41Leu
- NP_001394556.1:p.His41Leu
- NP_001394557.1:p.His41Leu
- NP_001394558.1:p.His41Leu
- NP_001394559.1:p.His41Leu
- NP_001394560.1:p.His41Leu
- NP_001394561.1:p.His41Leu
- NP_001394562.1:p.His41Leu
- NP_001394563.1:p.His41Leu
- NP_001394564.1:p.His41Leu
- NP_001394565.1:p.His41Leu
- NP_001394566.1:p.His41Leu
- NP_001394567.1:p.His41Leu
- NP_001394568.1:p.His41Leu
- NP_001394569.1:p.His41Leu
- NP_001394570.1:p.His41Leu
- NP_001394571.1:p.His41Leu
- NP_001394573.1:p.His41Leu
- NP_001394574.1:p.His41Leu
- NP_001394575.1:p.His41Leu
- NP_001394576.1:p.His41Leu
- NP_001394577.1:p.His41Leu
- NP_001394578.1:p.His41Leu
- NP_001394581.1:p.His41Leu
- NP_001394582.1:p.His41Leu
- NP_001394583.1:p.His41Leu
- NP_001394584.1:p.His41Leu
- NP_001394585.1:p.His41Leu
- NP_001394586.1:p.His41Leu
- NP_001394587.1:p.His41Leu
- NP_001394588.1:p.His41Leu
- NP_001394589.1:p.His41Leu
- NP_001394590.1:p.His41Leu
- NP_001394591.1:p.His41Leu
- NP_001394592.1:p.His41Leu
- NP_001394593.1:p.His41Leu
- NP_001394594.1:p.His41Leu
- NP_001394595.1:p.His41Leu
- NP_001394596.1:p.His41Leu
- NP_001394597.1:p.His41Leu
- NP_001394598.1:p.His41Leu
- NP_001394599.1:p.His41Leu
- NP_001394600.1:p.His41Leu
- NP_001394601.1:p.His41Leu
- NP_001394602.1:p.His41Leu
- NP_001394603.1:p.His41Leu
- NP_001394604.1:p.His41Leu
- NP_001394605.1:p.His41Leu
- NP_001394606.1:p.His41Leu
- NP_001394607.1:p.His41Leu
- NP_001394608.1:p.His41Leu
- NP_001394609.1:p.His41Leu
- NP_001394610.1:p.His41Leu
- NP_001394611.1:p.His41Leu
- NP_001394612.1:p.His41Leu
- NP_001394613.1:p.His41Leu
- NP_001394614.1:p.His41Leu
- NP_001394615.1:p.His41Leu
- NP_001394616.1:p.His41Leu
- NP_001394617.1:p.His41Leu
- NP_001394618.1:p.His41Leu
- NP_001394619.1:p.His41Leu
- NP_001394620.1:p.His41Leu
- NP_001394783.1:p.His41Leu
- NP_001394787.1:p.His41Leu
- NP_001394788.1:p.His41Leu
- NP_001394789.1:p.His41Leu
- NP_001394790.1:p.His41Leu
- NP_001394791.1:p.His41Leu
- NP_001394792.1:p.His41Leu
- NP_001394803.1:p.His41Leu
- NP_001394804.1:p.His41Leu
- NP_001394848.1:p.His41Leu
- NP_001394866.1:p.His41Leu
- NP_001394867.1:p.His41Leu
- NP_001394868.1:p.His41Leu
- NP_001394869.1:p.His41Leu
- NP_001394870.1:p.His41Leu
- NP_001394897.1:p.His41Leu
- NP_001394898.1:p.His41Leu
- NP_001394899.1:p.His41Leu
- NP_001394900.1:p.His41Leu
- NP_001394901.1:p.His41Leu
- NP_001394902.1:p.His41Leu
- NP_001394903.1:p.His41Leu
- NP_001394904.1:p.His41Leu
- NP_001394905.1:p.His41Leu
- NP_001394906.1:p.His41Leu
- NP_001394907.1:p.His41Leu
- NP_001394908.1:p.His41Leu
- NP_001394909.1:p.His41Leu
- NP_001394910.1:p.His41Leu
- NP_001394911.1:p.His41Leu
- NP_001394912.1:p.His41Leu
- NP_001394913.1:p.His41Leu
- NP_001394914.1:p.His41Leu
- NP_001394915.1:p.His41Leu
- NP_001394919.1:p.His41Leu
- NP_001394920.1:p.His41Leu
- NP_001394921.1:p.His41Leu
- NP_001394922.1:p.His41Leu
- NP_001395321.1:p.His41Leu
- NP_001395325.1:p.His41Leu
- NP_001395326.1:p.His41Leu
- NP_001395327.1:p.His41Leu
- NP_001395328.1:p.His41Leu
- NP_001395329.1:p.His41Leu
- NP_001395330.1:p.His41Leu
- NP_001395331.1:p.His41Leu
- NP_001395332.1:p.His41Leu
- NP_001395333.1:p.His41Leu
- NP_001395335.1:p.His41Leu
- NP_001395336.1:p.His41Leu
- NP_001395337.1:p.His41Leu
- NP_001395338.1:p.His41Leu
- NP_001395340.1:p.His41Leu
- NP_001395341.1:p.His41Leu
- NP_001395342.1:p.His41Leu
- NP_001395343.1:p.His41Leu
- NP_001395344.1:p.His41Leu
- NP_001395345.1:p.His41Leu
- NP_001395347.1:p.His41Leu
- NP_001395348.1:p.His41Leu
- NP_001395349.1:p.His41Leu
- NP_001395350.1:p.His41Leu
- NP_001395351.1:p.His41Leu
- NP_001395352.1:p.His41Leu
- NP_001395353.1:p.His41Leu
- NP_001395354.1:p.His41Leu
- NP_001395355.1:p.His41Leu
- NP_001395356.1:p.His41Leu
- NP_001395357.1:p.His41Leu
- NP_001395358.1:p.His41Leu
- NP_001395359.1:p.His41Leu
- NP_001395360.1:p.His41Leu
- NP_001395361.1:p.His41Leu
- NP_001395362.1:p.His41Leu
- NP_001395363.1:p.His41Leu
- NP_001395364.1:p.His41Leu
- NP_001395365.1:p.His41Leu
- NP_001395366.1:p.His41Leu
- NP_001395367.1:p.His41Leu
- NP_001395368.1:p.His41Leu
- NP_001395369.1:p.His41Leu
- NP_001395370.1:p.His41Leu
- NP_001395371.1:p.His41Leu
- NP_001395372.1:p.His41Leu
- NP_001395373.1:p.His41Leu
- NP_001395374.1:p.His41Leu
- NP_001395375.1:p.His41Leu
- NP_001395376.1:p.His41Leu
- NP_001395377.1:p.His41Leu
- NP_001395379.1:p.His41Leu
- NP_001395401.1:p.His41Leu
- NP_001395402.1:p.His41Leu
- NP_001395403.1:p.His41Leu
- NP_001395404.1:p.His41Leu
- NP_001395405.1:p.His41Leu
- NP_001395423.1:p.His41Leu
- NP_001395424.1:p.His41Leu
- NP_009225.1:p.His41Leu
- NP_009225.1:p.His41Leu
- NP_009229.2:p.His41Leu
- NP_009229.2:p.His41Leu
- NP_009230.2:p.His41Leu
- NP_009231.2:p.His41Leu
- NP_009235.2:p.His41Leu
- LRG_292t1:c.122A>T
- LRG_292:g.102246A>T
- LRG_292p1:p.His41Leu
- NC_000017.10:g.41267755T>A
- NM_007294.3:c.122A>T
- NM_007298.3:c.122A>T
- NR_027676.2:n.324A>T
This HGVS expression did not pass validation- Protein change:
- H41L
- Links:
- dbSNP: rs80357276
- NCBI 1000 Genomes Browser:
- rs80357276
- Molecular consequence:
- NM_007297.4:c.-8+8279A>T - intron variant - [Sequence Ontology: SO:0001627]
- NM_001407581.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407582.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407583.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407585.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407587.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407590.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407591.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407593.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407594.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407596.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407597.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407598.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407602.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407603.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407605.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407610.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407611.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407612.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407613.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407614.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407615.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407616.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407617.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407618.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407619.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407620.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407621.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407622.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407623.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407624.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407625.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407626.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407627.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407628.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407629.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407630.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407631.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407632.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407633.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407634.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407635.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407636.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407637.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407638.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407639.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407640.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407641.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407642.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407644.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407645.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407646.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407647.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407648.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407649.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407652.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407653.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407654.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407655.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407656.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407657.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407658.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407659.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407660.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407661.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407662.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407663.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407664.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407665.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407666.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407667.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407668.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407669.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407670.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407671.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407672.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407673.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407674.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407675.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407676.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407677.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407678.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407679.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407680.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407681.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407682.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407683.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407684.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407685.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407686.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407687.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407688.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407689.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407690.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407691.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407854.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407858.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407859.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407860.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407861.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407862.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407863.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407874.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407875.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407919.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407937.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407938.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407939.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407940.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407941.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407968.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407969.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407970.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407971.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407972.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407973.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407974.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407975.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407976.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407977.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407978.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407979.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407980.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407981.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407982.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407983.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407984.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407985.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407986.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407990.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407991.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407992.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001407993.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408392.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408396.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408397.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408398.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408399.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408400.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408401.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408402.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408403.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408404.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408406.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408407.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408408.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408409.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408411.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408412.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408413.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408414.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408415.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408416.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408418.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408419.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408420.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408421.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408422.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408423.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408424.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408425.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408426.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408427.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408428.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408429.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408430.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408431.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408432.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408433.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408434.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408435.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408436.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408437.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408438.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408439.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408440.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408441.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408442.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408443.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408444.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408445.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408446.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408447.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408448.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408450.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408472.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408473.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408474.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408475.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408476.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408494.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_001408495.1:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_007294.4:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_007298.4:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_007299.4:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_007300.4:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NM_007304.2:c.122A>T - missense variant - [Sequence Ontology: SO:0001583]
- NR_027676.2:n.324A>T - non-coding transcript variant - [Sequence Ontology: SO:0001619]
- Functional consequence:
- functionally_abnormal [Sequence Ontology: SO:0002218] - Comment(s)
- The saturation genome editing (SGE) assay for BRCA1 NM_007294.3:c.122A>T, a MISSENSE variant, produced a function score of -1.78, corresponding to a functional classification of LOSS_OF_FUNCTION. SGE function score ranges for classification are as follows: ‘functional’, score > -0.748; ‘intermediate’, -0.748 > score > -1.328; ‘non-functional’, score < -1.328. The median synonymous SNV scored 0.0 and the median nonsense SNV scored -2.12.
Condition(s)
Assertion and evidence details
Submission Accession | Submitter | Review Status (Assertion method) | Clinical Significance (Last evaluated) | Origin | Method | Citations |
---|---|---|---|---|---|---|
SCV001481655 | Baylor Genetics - CSER-TexasKidsCanSeq | criteria provided, single submitter (ACMG Guidelines, 2015) | Likely pathogenic (Jan 13, 2020) | maternal | clinical testing |
Summary from all submissions
Ethnicity | Origin | Affected | Individuals | Families | Chromosomes tested | Number Tested | Family history | Method |
---|---|---|---|---|---|---|---|---|
not provided | maternal | yes | not provided | not provided | not provided | not provided | not provided | clinical testing |
Citations
PubMed
Tung N, Battelli C, Allen B, Kaldate R, Bhatnagar S, Bowles K, Timms K, Garber JE, Herold C, Ellisen L, Krejdovsky J, DeLeonardis K, Sedgwick K, Soltis K, Roa B, Wenstrup RJ, Hartman AR.
Cancer. 2015 Jan 1;121(1):25-33. doi: 10.1002/cncr.29010. Epub 2014 Sep 3.
PubMed [citation]
- PMID:
- 25186627
Accurate classification of BRCA1 variants with saturation genome editing.
Findlay GM, Daza RM, Martin B, Zhang MD, Leith AP, Gasperini M, Janizek JD, Huang X, Starita LM, Shendure J.
Nature. 2018 Oct;562(7726):217-222. doi: 10.1038/s41586-018-0461-z. Epub 2018 Sep 12.
PubMed [citation]
- PMID:
- 30209399
- PMCID:
- PMC6181777
Details of each submission
From Baylor Genetics - CSER-TexasKidsCanSeq, SCV001481655.2
# | Ethnicity | Individuals | Chromosomes Tested | Family History | Method | Citations |
---|---|---|---|---|---|---|
1 | not provided | not provided | not provided | not provided | clinical testing | PubMed (3) |
Description
This variant was determined to be likely pathogenic according to ACMG Guidelines, 2015 [PMID:25741868]. This variant has been previously reported as disease-causing [PMID 25186627, 30209399]
# | Sample | Method | Observation | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Origin | Affected | Number tested | Tissue | Purpose | Method | Individuals | Allele frequency | Families | Co-occurrences | |
1 | maternal | yes | not provided | not provided | not provided | not provided | not provided | not provided | not provided |
Last Updated: Oct 8, 2024