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NM_004360.5(CDH1):c.2590G>A (p.Glu864Lys) AND Blepharocheilodontic syndrome 1

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jul 31, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001292691.2

Allele description [Variation Report for NM_004360.5(CDH1):c.2590G>A (p.Glu864Lys)]

NM_004360.5(CDH1):c.2590G>A (p.Glu864Lys)

Gene:
CDH1:cadherin 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
16q22.1
Genomic location:
Preferred name:
NM_004360.5(CDH1):c.2590G>A (p.Glu864Lys)
HGVS:
  • NC_000016.10:g.68833440G>A
  • NG_008021.1:g.101149G>A
  • NM_001317184.2:c.2407G>A
  • NM_001317185.2:c.1042G>A
  • NM_001317186.2:c.625G>A
  • NM_004360.5:c.2590G>AMANE SELECT
  • NP_001304113.1:p.Glu803Lys
  • NP_001304114.1:p.Glu348Lys
  • NP_001304115.1:p.Glu209Lys
  • NP_004351.1:p.Glu864Lys
  • LRG_301t1:c.2590G>A
  • LRG_301:g.101149G>A
  • NC_000016.9:g.68867343G>A
  • NM_004360.3:c.2590G>A
  • NM_004360.4:c.2590G>A
Protein change:
E209K
Links:
dbSNP: rs142927667
NCBI 1000 Genomes Browser:
rs142927667
Molecular consequence:
  • NM_001317184.2:c.2407G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317185.2:c.1042G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001317186.2:c.625G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_004360.5:c.2590G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Blepharocheilodontic syndrome 1 (BCDS1)
Identifiers:
MONDO: MONDO:0054740; MedGen: C4551988; Orphanet: 1997; OMIM: 119580

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001481302Baylor Genetics - CSER-TexasKidsCanSeq
criteria provided, single submitter

(ACMG Guidelines, 2015)
Uncertain significance
(Jul 31, 2019)
paternalclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedpaternalyesnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Baylor Genetics - CSER-TexasKidsCanSeq, SCV001481302.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1paternalyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Sep 29, 2024