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NM_172107.4(KCNQ2):c.430C>T (p.Arg144Trp) AND Developmental and epileptic encephalopathy, 7

Germline classification:
Likely pathogenic (2 submissions)
Last evaluated:
Jun 1, 2022
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001291707.5

Allele description [Variation Report for NM_172107.4(KCNQ2):c.430C>T (p.Arg144Trp)]

NM_172107.4(KCNQ2):c.430C>T (p.Arg144Trp)

Gene:
KCNQ2:potassium voltage-gated channel subfamily Q member 2 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
20q13.33
Genomic location:
Preferred name:
NM_172107.4(KCNQ2):c.430C>T (p.Arg144Trp)
Other names:
KCNQ2
HGVS:
  • NC_000020.11:g.63445322G>A
  • NG_009004.2:g.32319C>T
  • NM_004518.6:c.430C>T
  • NM_172106.3:c.430C>T
  • NM_172107.4:c.430C>TMANE SELECT
  • NM_172108.5:c.430C>T
  • NM_172109.3:c.430C>T
  • NP_004509.2:p.Arg144Trp
  • NP_742104.1:p.Arg144Trp
  • NP_742105.1:p.Arg144Trp
  • NP_742106.1:p.Arg144Trp
  • NP_742107.1:p.Arg144Trp
  • NC_000020.10:g.62076675G>A
  • NM_172107.2:c.430C>T
  • NM_172107.3:c.430C>T
Protein change:
R144W
Links:
Molecular consequence:
  • NM_004518.6:c.430C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172106.3:c.430C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172107.4:c.430C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172108.5:c.430C>T - missense variant - [Sequence Ontology: SO:0001583]
  • NM_172109.3:c.430C>T - missense variant - [Sequence Ontology: SO:0001583]
Functional consequence:
  • Moderate decrease in peak current [Functional Epilepsy Nomenclature for Ion Channels: FENICS-0086]
  • Severe hyperpolarizing shift of voltage dependence of activation [Functional Epilepsy Nomenclature for Ion Channels: FENICS-0031]
  • Severe slowing of activation [Functional Epilepsy Nomenclature for Ion Channels: FENICS-0015]
Observations:
1

Condition(s)

Name:
Developmental and epileptic encephalopathy, 7 (DEE7)
Synonyms:
Early infantile epileptic encephalopathy 7; KCNQ2-Related Neonatal Epileptic Encephalopathy
Identifiers:
MONDO: MONDO:0013387; MedGen: C3150986; Orphanet: 439218; OMIM: 613720

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV005091467Solve-RD Consortium
no assertion criteria provided
Likely pathogenic
(Jun 1, 2022)
inheritedprovider interpretation

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedinheritedyesnot providednot providednot providednot providednot providedprovider interpretation
not providedgermlineunknown1not providednot provided1not providedclinical testing

Details of each submission

From New York Genome Center - CSER-NYCKidSeq, SCV001480292.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknown1not providednot provided1not providednot providednot provided

From Solve-RD Consortium, SCV005091467.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedprovider interpretationnot provided

Description

Variant confirmed as disease-causing by referring clinical team

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritedyesnot providednot providednot providednot providednot providednot providednot provided

Flagged submissions

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001480292New York Genome Center - CSER-NYCKidSeq
flagged submission
Reason: Older and outlier claim with insufficient supporting evidence
Notes: None

(NYGC Assertion Criteria 2020)
Uncertain significance
(Oct 7, 2019)
germlineclinical testing

Citation Link

Last Updated: Oct 26, 2024