NM_000435.3(NOTCH3):c.512_605delinsA (p.Gly171_Ala202delinsGlu) AND not provided

Germline classification:: Likely pathogenic (1 submission)
Last evaluated:: Oct 30, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001288092.2

Allele description [Variation Report for NM_000435.3(NOTCH3):c.512_605delinsA (p.Gly171_Ala202delinsGlu)]

NM_000435.3(NOTCH3):c.512_605delinsA (p.Gly171_Ala202delinsGlu)

Gene:

NOTCH3:notch receptor 3 [Gene - OMIM - HGNC]

Variant type:

Indel

Cytogenetic location:

19p13.12

Genomic location:

Preferred name:

NM_000435.3(NOTCH3):c.512_605delinsA (p.Gly171_Ala202delinsGlu)

HGVS:

NC_000019.10:g.15192034_15192127delinsT
NG_009819.1:g.13855_13948delinsA
NM_000435.3:c.512_605delinsAMANE SELECT
NP_000426.2:p.Gly171_Ala202delinsGlu
NC_000019.9:g.15302845_15302938delinsT
NM_000435.2:c.512_605delinsA

Links:

dbSNP: rs2046931882

NCBI 1000 Genomes Browser:

rs2046931882

Molecular consequence:

NM_000435.3:c.512_605delinsA - inframe_indel - [Sequence Ontology: SO:0001820]

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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alpha-protein kinase 3 [Homo sapiens]
alpha-protein kinase 3 [Homo sapiens]
gi|115511036|ref|NP_065829.3|

Protein
Mus musculus DEAD-box helicase 6 (Ddx6), transcript variant 5, mRNA
Mus musculus DEAD-box helicase 6 (Ddx6), transcript variant 5, mRNA
gi|1274096067|ref|NM_001357703.1|

Nucleotide

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001474940	Athena Diagnostics	criteria provided, single submitter (Athena Diagnostics Criteria)	Likely pathogenic (Oct 30, 2019)	unknown	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001474940

Athena Diagnostics

criteria provided, single submitter

(Athena Diagnostics Criteria)

Likely pathogenic
(Oct 30, 2019)

unknown

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	unknown	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]

PMID:: 26467025
PMCID:: PMC4737317

Details of each submission

From Athena Diagnostics, SCV001474940.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	PubMed (1)

Description

The variant disrupts a cysteine residue in an EGF-like repeat domain, which is important for the structure of this protein. Therefore it is expected to severely affect the function of the protein. Not found in the total gnomAD dataset, and the data is high quality.

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	unknown	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: May 7, 2024

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