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NM_000179.3(MSH6):c.3561_3565dup (p.Thr1189fs) AND not provided

Germline classification:
Pathogenic (1 submission)
Last evaluated:
Sep 4, 2019
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001284016.1

Allele description [Variation Report for NM_000179.3(MSH6):c.3561_3565dup (p.Thr1189fs)]

NM_000179.3(MSH6):c.3561_3565dup (p.Thr1189fs)

Gene:
MSH6:mutS homolog 6 [Gene - OMIM - HGNC]
Variant type:
Duplication
Cytogenetic location:
2p16.3
Genomic location:
Preferred name:
NM_000179.3(MSH6):c.3561_3565dup (p.Thr1189fs)
HGVS:
  • NC_000002.12:g.47805622_47805626dup
  • NG_007111.1:g.27476_27480dup
  • NG_008397.1:g.105051_105055dup
  • NM_000179.3:c.3561_3565dupMANE SELECT
  • NM_001281492.2:c.3171_3175dup
  • NM_001281493.2:c.2655_2659dup
  • NM_001281494.2:c.2655_2659dup
  • NP_000170.1:p.Thr1189fs
  • NP_001268421.1:p.Thr1059fs
  • NP_001268422.1:p.Thr887fs
  • NP_001268423.1:p.Thr887fs
  • LRG_219t1:c.3561_3565dup
  • LRG_219:g.27476_27480dup
  • NC_000002.11:g.48032759_48032760insAAAGT
  • NC_000002.11:g.48032761_48032765dup
  • NM_000179.2:c.3561_3565dup
  • NM_000179.2:c.3561_3565dupAAGTA
Protein change:
T1059fs
Links:
dbSNP: rs891318615
NCBI 1000 Genomes Browser:
rs891318615
Molecular consequence:
  • NM_000179.3:c.3561_3565dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001281492.2:c.3171_3175dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001281493.2:c.2655_2659dup - frameshift variant - [Sequence Ontology: SO:0001589]
  • NM_001281494.2:c.2655_2659dup - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001469570Quest Diagnostics Nichols Institute San Juan Capistrano
criteria provided, single submitter

(Quest Diagnostics criteria)		Pathogenic
(Sep 4, 2019) 		unknownclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedunknownunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

A Standardized DNA Variant Scoring System for Pathogenicity Assessments in Mendelian Disorders.

Karbassi I, Maston GA, Love A, DiVincenzo C, Braastad CD, Elzinga CD, Bright AR, Previte D, Zhang K, Rowland CM, McCarthy M, Lapierre JL, Dubois F, Medeiros KA, Batish SD, Jones J, Liaquat K, Hoffman CA, Jaremko M, Wang Z, Sun W, Buller-Burckle A, et al.

Hum Mutat. 2016 Jan;37(1):127-34. doi: 10.1002/humu.22918. Epub 2015 Oct 29.

PubMed [citation]
PMID:
26467025
PMCID:
PMC4737317

Details of each submission

From Quest Diagnostics Nichols Institute San Juan Capistrano, SCV001469570.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (1)

Description

The variant results in a shift of the reading frame, and is therefore predicted to result in the loss of a functional protein. Found in at least one patient with expected phenotype for this gene, and not found in general population data.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1unknownunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 8, 2024