NM_012203.2(GRHPR):c.578C>T (p.Ala193Val) AND Primary hyperoxaluria, type II

Germline classification:: Likely benign (1 submission)
Last evaluated:: Aug 7, 2020
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001279921.1

Allele description [Variation Report for NM_012203.2(GRHPR):c.578C>T (p.Ala193Val)]

NM_012203.2(GRHPR):c.578C>T (p.Ala193Val)

Gene:

GRHPR:glyoxylate and hydroxypyruvate reductase [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

9p13.2

Genomic location:

Preferred name:

NM_012203.2(GRHPR):c.578C>T (p.Ala193Val)

HGVS:

NC_000009.12:g.37429816C>T
NG_008135.1:g.12107C>T
NM_012203.2:c.578C>TMANE SELECT
NP_036335.1:p.Ala193Val
NC_000009.11:g.37429813C>T
NM_012203.1:c.578C>T

Protein change:

A193V

Links:

dbSNP: rs771231175

NCBI 1000 Genomes Browser:

rs771231175

Molecular consequence:

NM_012203.2:c.578C>T - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:: Primary hyperoxaluria, type II (HP2)
Synonyms:: OXALOSIS II; Primary hyperoxaluria type 2; Oxalosis 2; See all synonyms [MedGen]
Identifiers:: MONDO: MONDO:0009824; MedGen: C0268165; Orphanet: 416; Orphanet: 93599; OMIM: 260000

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001467058	Natera, Inc.	no assertion criteria provided	Likely benign (Aug 7, 2020)	germline	clinical testing

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001467058

Natera, Inc.

no assertion criteria provided

Likely benign
(Aug 7, 2020)

germline

clinical testing

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	unknown	not provided	not provided	not provided	not provided	not provided	clinical testing

Details of each submission

From Natera, Inc., SCV001467058.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	not provided	not provided	not provided	clinical testing	not provided

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	unknown	not provided	not provided	not provided		not provided	not provided	not provided	not provided

Last Updated: Nov 3, 2024

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