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NM_000543.5(SMPD1):c.318+5G>A AND Sphingomyelin/cholesterol lipidosis

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Jun 30, 2020
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001279280.1

Allele description [Variation Report for NM_000543.5(SMPD1):c.318+5G>A]

NM_000543.5(SMPD1):c.318+5G>A

Gene:
SMPD1:sphingomyelin phosphodiesterase 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11p15.4
Genomic location:
Preferred name:
NM_000543.5(SMPD1):c.318+5G>A
HGVS:
  • NC_000011.10:g.6390921G>A
  • NG_011780.1:g.5497G>A
  • NM_000543.5:c.318+5G>AMANE SELECT
  • NM_001007593.3:c.318+5G>A
  • NM_001318087.2:c.318+5G>A
  • NM_001318088.2:c.-644+5G>A
  • NM_001365135.2:c.318+5G>A
  • NC_000011.9:g.6412151G>A
Links:
dbSNP: rs375723261
NCBI 1000 Genomes Browser:
rs375723261
Molecular consequence:
  • NM_000543.5:c.318+5G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001007593.3:c.318+5G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001318087.2:c.318+5G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001318088.2:c.-644+5G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001365135.2:c.318+5G>A - intron variant - [Sequence Ontology: SO:0001627]

Condition(s)

Name:
Sphingomyelin/cholesterol lipidosis
Synonyms:
Niemann-Pick disease
Identifiers:
MONDO: MONDO:0001982; MedGen: C0028064

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001466363Natera, Inc.
no assertion criteria provided
Uncertain significance
(Jun 30, 2020)
germlineclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Natera, Inc., SCV001466363.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Apr 6, 2024