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NM_000051.4(ATM):c.7789-3T>G AND Breast and/or ovarian cancer

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Jun 11, 2019
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001270955.9

Allele description [Variation Report for NM_000051.4(ATM):c.7789-3T>G]

NM_000051.4(ATM):c.7789-3T>G

Genes:
ATM:ATM serine/threonine kinase [Gene - OMIM - HGNC]
C11orf65:chromosome 11 open reading frame 65 [Gene - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
11q22.3
Genomic location:
Preferred name:
NM_000051.4(ATM):c.7789-3T>G
HGVS:
  • NC_000011.10:g.108332759T>G
  • NG_009830.1:g.114928T>G
  • NG_054724.1:g.142074A>C
  • NM_000051.4:c.7789-3T>GMANE SELECT
  • NM_001330368.2:c.641-23688A>C
  • NM_001351110.2:c.*38+2461A>C
  • NM_001351834.2:c.7789-3T>G
  • LRG_135t1:c.7789-3T>G
  • LRG_135:g.114928T>G
  • NC_000011.9:g.108203486T>G
  • NM_000051.3:c.7789-3T>G
Links:
dbSNP: rs864622185
NCBI 1000 Genomes Browser:
rs864622185
Molecular consequence:
  • NM_000051.4:c.7789-3T>G - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001330368.2:c.641-23688A>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351110.2:c.*38+2461A>C - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001351834.2:c.7789-3T>G - intron variant - [Sequence Ontology: SO:0001627]
Observations:
1

Condition(s)

Name:
Breast and/or ovarian cancer
Identifiers:
MedGen: CN221562

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV001451759CZECANCA consortium
no assertion criteria provided
Likely pathogenic
(Jun 11, 2019) 		germlineclinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Slavicgermlineyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Multigene Panel Germline Testing of 1333 Czech Patients with Ovarian Cancer.

Lhotova K, Stolarova L, Zemankova P, Vocka M, Janatova M, Borecka M, Cerna M, Jelinkova S, Kral J, Volkova Z, Urbanova M, Kleiblova P, Machackova E, Foretova L, Hazova J, Vasickova P, Lhota F, Koudova M, Cerna L, Tavandzis S, Indrakova J, Hruskova L, et al.

Cancers (Basel). 2020 Apr 13;12(4). doi:pii: E956. 10.3390/cancers12040956.

PubMed [citation]
PMID:
32295079
PMCID:
PMC7226062

Details of each submission

From CZECANCA consortium, SCV001451759.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Slavic1not providednot providedclinical testing PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Nov 3, 2024