NM_000249.4(MLH1):c.203T>A (p.Ile68Asn) AND not provided

Germline classification:: Pathogenic (1 submission)
Last evaluated:: Aug 30, 2019
Review status:: 1 star out of maximum of 4 stars
criteria provided, single submitter

Somatic classification of clinical impact:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Somatic classification of oncogenicity:: None
Review status:: (0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided

Record status:: current
Accession:: RCV001269638.2

Allele description [Variation Report for NM_000249.4(MLH1):c.203T>A (p.Ile68Asn)]

NM_000249.4(MLH1):c.203T>A (p.Ile68Asn)

Gene:

MLH1:mutL homolog 1 [Gene - OMIM - HGNC]

Variant type:

single nucleotide variant

Cytogenetic location:

3p22.2

Genomic location:

Preferred name:

NM_000249.4(MLH1):c.203T>A (p.Ile68Asn)

HGVS:

NC_000003.12:g.36996705T>A
NG_007109.2:g.8356T>A
NG_008418.1:g.1600A>T
NM_000249.4:c.203T>AMANE SELECT
NM_001167617.3:c.-87T>A
NM_001167618.3:c.-521T>A
NM_001167619.3:c.-429T>A
NM_001258271.2:c.203T>A
NM_001258273.2:c.-517+3042T>A
NM_001258274.3:c.-666T>A
NM_001354615.2:c.-424T>A
NM_001354616.2:c.-429T>A
NM_001354617.2:c.-521T>A
NM_001354618.2:c.-521T>A
NM_001354619.2:c.-521T>A
NM_001354620.2:c.-87T>A
NM_001354621.2:c.-614T>A
NM_001354622.2:c.-727T>A
NM_001354623.2:c.-723+2815T>A
NM_001354624.2:c.-624T>A
NM_001354625.2:c.-527T>A
NM_001354626.2:c.-624T>A
NM_001354627.2:c.-624T>A
NM_001354628.2:c.203T>A
NM_001354629.2:c.203T>A
NM_001354630.2:c.203T>A
NP_000240.1:p.Ile68Asn
NP_000240.1:p.Ile68Asn
NP_001245200.1:p.Ile68Asn
NP_001341557.1:p.Ile68Asn
NP_001341558.1:p.Ile68Asn
NP_001341559.1:p.Ile68Asn
LRG_216t1:c.203T>A
LRG_216:g.8356T>A
LRG_216p1:p.Ile68Asn
NC_000003.11:g.37038196T>A
NM_000249.3:c.203T>A
P40692:p.Ile68Asn

Protein change:

I68N

Links:

UniProtKB: P40692#VAR_004440; dbSNP: rs63750281

NCBI 1000 Genomes Browser:

rs63750281

Molecular consequence:

NM_001167617.3:c.-87T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001167618.3:c.-521T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001167619.3:c.-429T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001258274.3:c.-666T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354615.2:c.-424T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354616.2:c.-429T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354617.2:c.-521T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354618.2:c.-521T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354619.2:c.-521T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354620.2:c.-87T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354621.2:c.-614T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354622.2:c.-727T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354624.2:c.-624T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354625.2:c.-527T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354626.2:c.-624T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001354627.2:c.-624T>A - 5 prime UTR variant - [Sequence Ontology: SO:0001623]
NM_001258273.2:c.-517+3042T>A - intron variant - [Sequence Ontology: SO:0001627]
NM_001354623.2:c.-723+2815T>A - intron variant - [Sequence Ontology: SO:0001627]
NM_000249.4:c.203T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001258271.2:c.203T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001354628.2:c.203T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001354629.2:c.203T>A - missense variant - [Sequence Ontology: SO:0001583]
NM_001354630.2:c.203T>A - missense variant - [Sequence Ontology: SO:0001583]

Observations:

Condition(s)

Synonyms:: none provided
Identifiers:: MedGen: C3661900

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Submission Accession	Submitter	Review Status (Assertion method)	Clinical Significance (Last evaluated)	Origin	Method	Citations
SCV001449763	Clinical Genetics and Genomics, Karolinska University Hospital	criteria provided, single submitter (ACMG Guidelines, 2015)	Pathogenic (Aug 30, 2019)	germline	clinical testing	PubMed (1) [See all records that cite this PMID]

Submission Accession

Submitter

Review Status
(Assertion method)

Clinical Significance
(Last evaluated)

Origin

Method

Citations

SCV001449763

Clinical Genetics and Genomics, Karolinska University Hospital

criteria provided, single submitter

(ACMG Guidelines, 2015)

Pathogenic
(Aug 30, 2019)

germline

clinical testing

PubMed (1)
[See all records that cite this PMID]

Help

Summary from all submissions

Ethnicity	Origin	Affected	Individuals	Families	Chromosomes tested	Number Tested	Family history	Method
not provided	germline	yes	4	not provided	not provided	not provided	not provided	clinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]

PMID:: 25741868
PMCID:: PMC4544753

Details of each submission

From Clinical Genetics and Genomics, Karolinska University Hospital, SCV001449763.1

#	Ethnicity	Individuals	Chromosomes Tested	Family History	Method	Citations
1	not provided	4	not provided	not provided	clinical testing	PubMed (1)

#	Sample				Method		Observation
#	Origin	Affected	Number tested	Tissue	Purpose	Method	Individuals	Allele frequency	Families	Co-occurrences
1	germline	yes	not provided	not provided	not provided		4	not provided	not provided	not provided

Last Updated: Feb 4, 2024

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