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NM_002834.5(PTPN11):c.179G>A (p.Gly60Asp) AND Noonan syndrome 1

Germline classification:
Pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001268963.2

Allele description [Variation Report for NM_002834.5(PTPN11):c.179G>A (p.Gly60Asp)]

NM_002834.5(PTPN11):c.179G>A (p.Gly60Asp)

Gene:
PTPN11:protein tyrosine phosphatase non-receptor type 11 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q24.13
Genomic location:
Preferred name:
NM_002834.5(PTPN11):c.179G>A (p.Gly60Asp)
HGVS:
  • NC_000012.12:g.112450359G>A
  • NG_007459.1:g.36628G>A
  • NM_001330437.2:c.179G>A
  • NM_001374625.1:c.176G>A
  • NM_002834.5:c.179G>AMANE SELECT
  • NM_080601.3:c.179G>A
  • NP_001317366.1:p.Gly60Asp
  • NP_001361554.1:p.Gly59Asp
  • NP_002825.3:p.Gly60Asp
  • NP_542168.1:p.Gly60Asp
  • LRG_614:g.36628G>A
  • NC_000012.11:g.112888163G>A
  • NM_002834.4:c.179G>A
  • p.(Gly60Asp)
Protein change:
G59D
Links:
dbSNP: rs397507509
NCBI 1000 Genomes Browser:
rs397507509
Molecular consequence:
  • NM_001330437.2:c.179G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001374625.1:c.176G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_002834.5:c.179G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_080601.3:c.179G>A - missense variant - [Sequence Ontology: SO:0001583]

Condition(s)

Name:
Noonan syndrome 1 (NS1)
Synonyms:
Turner Syndrome, Male; Turner phenotype with normal karyotype; Female pseudo-Turner syndrome
Identifiers:
MONDO: MONDO:0008104; MedGen: C4551602; Orphanet: 648; OMIM: 163950

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001448191Pediatric Endocrinology Clinic, Ege University School of Medicine
no assertion criteria provided
Pathogenicde novoclinical testing

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedde novoyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From Pediatric Endocrinology Clinic, Ege University School of Medicine, SCV001448191.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1de novoyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Oct 20, 2024