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NM_000162.5(GCK):c.1219G>A (p.Gly407Ser) AND Inborn genetic diseases

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Nov 14, 2017
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001266778.2

Allele description [Variation Report for NM_000162.5(GCK):c.1219G>A (p.Gly407Ser)]

NM_000162.5(GCK):c.1219G>A (p.Gly407Ser)

Gene:
GCK:glucokinase [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
7p13
Genomic location:
Preferred name:
NM_000162.5(GCK):c.1219G>A (p.Gly407Ser)
HGVS:
  • NC_000007.14:g.44145531C>T
  • NG_008847.2:g.57640G>A
  • NM_000162.5:c.1219G>AMANE SELECT
  • NM_001354800.1:c.1219G>A
  • NM_001354801.1:c.208G>A
  • NM_001354802.1:c.79G>A
  • NM_001354803.2:c.253G>A
  • NM_033507.3:c.1222G>A
  • NM_033508.3:c.1216G>A
  • NP_000153.1:p.Gly407Ser
  • NP_001341729.1:p.Gly407Ser
  • NP_001341730.1:p.Gly70Ser
  • NP_001341731.1:p.Gly27Ser
  • NP_001341732.1:p.Gly85Ser
  • NP_277042.1:p.Gly408Ser
  • NP_277043.1:p.Gly406Ser
  • LRG_1074t1:c.1219G>A
  • LRG_1074t2:c.1222G>A
  • LRG_1074:g.57640G>A
  • LRG_1074p1:p.Gly407Ser
  • LRG_1074p2:p.Gly408Ser
  • NC_000007.13:g.44185130C>T
  • NC_000007.13:g.44185130C>T
  • NM_000162.3:c.1219G>A
Protein change:
G27S
Links:
dbSNP: rs2096271295
NCBI 1000 Genomes Browser:
rs2096271295
Molecular consequence:
  • NM_000162.5:c.1219G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354800.1:c.1219G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354801.1:c.208G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354802.1:c.79G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001354803.2:c.253G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033507.3:c.1222G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_033508.3:c.1216G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Inborn genetic diseases
Identifiers:
MeSH: D030342; MedGen: C0950123

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001444957Ambry Genetics
criteria provided, single submitter

(Ambry exome assertion method (8-5-2015))
Uncertain significance
(Nov 14, 2017)
germlineclinical testing

PubMed (2)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
African Americangermlineyes1not providednot provided1not providedclinical testing

Citations

PubMed

Diagnosis of MODY in the offspring of parents with insulin-dependent and non-insulin-dependent diabetes mellitus.

Guazzarotti L, Fumelli P, Testa I, Pecora R, Panicari F, Bellanné-Chantelot C, Bartolotta E.

J Pediatr Endocrinol Metab. 2001;14 Suppl 1:611-7.

PubMed [citation]
PMID:
11393552

The active conformation of human glucokinase is not altered by allosteric activators.

Petit P, Antoine M, Ferry G, Boutin JA, Lagarde A, Gluais L, Vincentelli R, Vuillard L.

Acta Crystallogr D Biol Crystallogr. 2011 Nov;67(Pt 11):929-35. doi: 10.1107/S0907444911036729. Epub 2011 Oct 19.

PubMed [citation]
PMID:
22101819

Details of each submission

From Ambry Genetics, SCV001444957.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1African American1not providednot providedclinical testing PubMed (2)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyes1not providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024