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NM_001032382.2(PQBP1):c.539G>A (p.Arg180His) AND Intellectual disability, mild

Germline classification:
Likely benign (1 submission)
Last evaluated:
Oct 29, 2020
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001263095.2

Allele description [Variation Report for NM_001032382.2(PQBP1):c.539G>A (p.Arg180His)]

NM_001032382.2(PQBP1):c.539G>A (p.Arg180His)

Gene:
PQBP1:polyglutamine binding protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
Xp11.23
Genomic location:
Preferred name:
NM_001032382.2(PQBP1):c.539G>A (p.Arg180His)
HGVS:
  • NC_000023.11:g.48902479G>A
  • NG_015967.1:g.9562G>A
  • NG_015968.2:g.671C>T
  • NG_034300.1:g.14480C>T
  • NM_001032381.2:c.539G>A
  • NM_001032382.2:c.539G>AMANE SELECT
  • NM_001032383.2:c.539G>A
  • NM_001032384.1:c.539G>A
  • NM_001167989.2:c.539G>A
  • NM_001167990.2:c.515G>A
  • NM_001167992.1:c.239G>A
  • NM_005710.2:c.539G>A
  • NM_144495.3:c.293-253G>A
  • NP_001027553.1:p.Arg180His
  • NP_001027554.1:p.Arg180His
  • NP_001027555.1:p.Arg180His
  • NP_001027556.1:p.Arg180His
  • NP_001161461.1:p.Arg180His
  • NP_001161462.1:p.Arg172His
  • NP_001161464.1:p.Arg80His
  • NP_005701.1:p.Arg180His
  • NC_000023.10:g.48759756G>A
Protein change:
R172H
Links:
dbSNP: rs907427275
NCBI 1000 Genomes Browser:
rs907427275
Molecular consequence:
  • NM_144495.3:c.293-253G>A - intron variant - [Sequence Ontology: SO:0001627]
  • NM_001032381.2:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001032382.2:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001032383.2:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001032384.1:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001167989.2:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001167990.2:c.515G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_001167992.1:c.239G>A - missense variant - [Sequence Ontology: SO:0001583]
  • NM_005710.2:c.539G>A - missense variant - [Sequence Ontology: SO:0001583]
Observations:
1

Condition(s)

Name:
Intellectual disability, mild
Identifiers:
MedGen: C0026106; Human Phenotype Ontology: HP:0001256

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001440920Service de Biochimie Médicale et Biologie Moléculaire, CHU Clermont-Ferrand
criteria provided, single submitter

(ACMG Guidelines, 2015)
Likely benign
(Oct 29, 2020)
maternalclinical testing

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedmaternalyes1not providednot providednot providednot providedclinical testing

Citations

PubMed

Standards and guidelines for the interpretation of sequence variants: a joint consensus recommendation of the American College of Medical Genetics and Genomics and the Association for Molecular Pathology.

Richards S, Aziz N, Bale S, Bick D, Das S, Gastier-Foster J, Grody WW, Hegde M, Lyon E, Spector E, Voelkerding K, Rehm HL; ACMG Laboratory Quality Assurance Committee..

Genet Med. 2015 May;17(5):405-24. doi: 10.1038/gim.2015.30. Epub 2015 Mar 5.

PubMed [citation]
PMID:
25741868
PMCID:
PMC4544753

Details of each submission

From Service de Biochimie Médicale et Biologie Moléculaire, CHU Clermont-Ferrand, SCV001440920.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
11not providednot providedclinical testing PubMed (1)

Description

PM1 + PM2 + PP3 + BS2 + BP1 Observed in an healthy man in the family.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1maternalyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Sep 29, 2024