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NM_025114.4(CEP290):c.5668G>T (p.Gly1890Ter) AND Meckel syndrome, type 6

Germline classification:
Pathogenic (1 submission)
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001261607.3

Allele description [Variation Report for NM_025114.4(CEP290):c.5668G>T (p.Gly1890Ter)]

NM_025114.4(CEP290):c.5668G>T (p.Gly1890Ter)

Gene:
CEP290:centrosomal protein 290 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
12q21.32
Genomic location:
Preferred name:
NM_025114.4(CEP290):c.5668G>T (p.Gly1890Ter)
HGVS:
  • NC_000012.12:g.88077263C>A
  • NG_008417.2:g.69954G>T
  • NM_025114.4:c.5668G>TMANE SELECT
  • NP_079390.3:p.Gly1890Ter
  • NP_079390.3:p.Gly1890Ter
  • LRG_694t1:c.5668G>T
  • LRG_694:g.69954G>T
  • LRG_694p1:p.Gly1890Ter
  • NC_000012.11:g.88471040C>A
  • NG_008417.1:g.69954G>T
  • NM_025114.3:c.5668G>T
  • NM_025114.3:c.[5668G>T]
  • NP_079390.3:p.Gly1890*
Protein change:
G1890*; GLY1890TER
Links:
OMIM: 610142.0001; dbSNP: rs137852832
NCBI 1000 Genomes Browser:
rs137852832
Molecular consequence:
  • NM_025114.4:c.5668G>T - nonsense - [Sequence Ontology: SO:0001587]
Observations:
1

Condition(s)

Name:
Meckel syndrome, type 6
Identifiers:
MONDO: MONDO:0012848; MedGen: C2676790; Orphanet: 564; OMIM: 612284

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001438891Pathology and Clinical Laboratory Medicine, King Fahad Medical City
criteria provided, single submitter

(ACMG Guidelines, 2015)
Pathogenicgermlineclinical testing

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
Arabgermlineyes1not providednot providednot providednot providedclinical testing

Details of each submission

From Pathology and Clinical Laboratory Medicine, King Fahad Medical City, SCV001438891.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1Arab1not providednot providedclinical testingnot provided
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Aug 18, 2024