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NM_020366.4(RPGRIP1):c.1611G>A (p.Gln537=) AND Leber congenital amaurosis 6

Germline classification:
Pathogenic (1 submission)
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV001261180.2

Allele description [Variation Report for NM_020366.4(RPGRIP1):c.1611G>A (p.Gln537=)]

NM_020366.4(RPGRIP1):c.1611G>A (p.Gln537=)

Gene:
RPGRIP1:RPGR interacting protein 1 [Gene - OMIM - HGNC]
Variant type:
single nucleotide variant
Cytogenetic location:
14q11.2
Genomic location:
Preferred name:
NM_020366.4(RPGRIP1):c.1611G>A (p.Gln537=)
HGVS:
  • NC_000014.9:g.21321402G>A
  • NG_008933.1:g.38426G>A
  • NM_001377523.1:c.537G>A
  • NM_001377948.1:c.537G>A
  • NM_001377949.1:c.537G>A
  • NM_001377950.1:c.537G>A
  • NM_001377951.1:c.39G>A
  • NM_020366.4:c.1611G>AMANE SELECT
  • NP_001364452.1:p.Gln179=
  • NP_001364877.1:p.Gln179=
  • NP_001364878.1:p.Gln179=
  • NP_001364879.1:p.Gln179=
  • NP_001364880.1:p.Gln13=
  • NP_065099.3:p.Gln537=
  • NP_065099.3:p.Gln537=
  • NC_000014.8:g.21789561G>A
  • NM_020366.3:c.1611G>A
Links:
dbSNP: rs1064797181
NCBI 1000 Genomes Browser:
rs1064797181
Molecular consequence:
  • NM_001377523.1:c.537G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001377948.1:c.537G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001377949.1:c.537G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001377950.1:c.537G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_001377951.1:c.39G>A - synonymous variant - [Sequence Ontology: SO:0001819]
  • NM_020366.4:c.1611G>A - synonymous variant - [Sequence Ontology: SO:0001819]
Functional consequence:
sequence_variant_affecting_splicing [Sequence Ontology: SO:1000071]

Condition(s)

Name:
Leber congenital amaurosis 6 (LCA6)
Identifiers:
MONDO: MONDO:0013446; MedGen: C1854260; Orphanet: 65; OMIM: 613826

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV001438579Laboratory of Genetics in Ophthalmology, Institut Imagine
no assertion criteria provided
Pathogenicinheritedresearch

PubMed (1)
[See all records that cite this PMID]

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedinheritedyes1not providednot providednot providednot providedresearch

Citations

PubMed

Leveraging splice-affecting variant predictors and a minigene validation system to identify Mendelian disease-causing variants among exon-captured variants of uncertain significance.

Soens ZT, Branch J, Wu S, Yuan Z, Li Y, Li H, Wang K, Xu M, Rajan L, Motta FL, Simões RT, Lopez-Solache I, Ajlan R, Birch DG, Zhao P, Porto FB, Sallum J, Koenekoop RK, Sui R, Chen R.

Hum Mutat. 2017 Nov;38(11):1521-1533. doi: 10.1002/humu.23294. Epub 2017 Aug 18.

PubMed [citation]
PMID:
28714225
PMCID:
PMC5638688

Details of each submission

From Laboratory of Genetics in Ophthalmology, Institut Imagine, SCV001438579.1

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not provided1not providednot providedresearch PubMed (1)
#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1inheritedyesnot providednot providednot provided1not providednot providednot provided

Last Updated: Aug 4, 2024